Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq24 710 0.0 seq7 706 0.0 seq2 291 3e-76 >seq24 Length=127602 Score = 710 bits (786), Expect = 0.0 Identities = 479/532 (90%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 81085 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 81144 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 81145 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 81204 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCAT 183 ||| ||||| | |||| ||| ||| || ||| | || | |||| |||| Sbjct 81205 GGCTGCCGAAGCAAGCCTTTGGACCAAAAACAGG--GGTAATACCCCGCCTCCGATTCAC 81262 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 81263 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAC 81319 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81320 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 81379 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 81380 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 81439 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81440 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 81499 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81500 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 81559 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 81560 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 81611 Score = 706 bits (782), Expect = 0.0 Identities = 478/532 (90%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 47459 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 47518 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 47519 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 47578 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCAT 183 || ||||| | |||| ||| ||| || ||| | || | |||| |||| Sbjct 47579 AGCTGCCGAAGCAAGCCTTTGGACCAAAAACAGG--GGTAATACCCCGCCTCCGATTCAC 47636 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 47637 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAC 47693 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47694 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 47753 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 47754 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 47813 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47814 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 47873 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47874 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 47933 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 47934 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 47985 Score = 706 bits (782), Expect = 0.0 Identities = 478/532 (90%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 119243 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 119302 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 119303 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 119362 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCAT 183 || ||||| | |||| ||| ||| || ||| | || | |||| |||| Sbjct 119363 AGCTGCCGAAGCAAGCCTTTGGACCAAAAACAGG--GGTAATACCCCGCCTCCGATTCAC 119420 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 119421 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAC 119477 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119478 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 119537 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 119538 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 119597 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119598 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 119657 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119658 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 119717 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 119718 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 119769 Score = 412 bits (456), Expect = 1e-112 Identities = 312/362 (86%), Gaps = 17/362 (5%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| ||| Sbjct 125751 TTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCT 125807 Query 239 CCCACTTATTCTACACCTCTCAAGTCATT----TCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||| | | || | | ||||| | |||| | || ||| | || Sbjct 125808 CCCACGAACTGGGATGCTTT--ATTCATTAGGTTAACAACCATATA-TATAGT---GTTC 125861 Query 295 A-ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 | ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 125862 ATACAAGGTCTT---TCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 125918 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125919 TGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 125978 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125979 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 126038 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 126039 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCA 126098 Query 534 TC 535 || Sbjct 126099 TC 126100 >seq7 Length=17303919 Score = 706 bits (782), Expect = 0.0 Identities = 478/532 (90%), Gaps = 8/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 15085931 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 15085872 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15085871 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 15085812 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCAT 183 || ||||| | |||| ||| ||| || ||| | || | |||| |||| Sbjct 15085811 AGCTGCCGAAGCAAGCCTTTGGACCAAAAACAGG--GGTAATACCCCGCCTCCGATTCAC 15085754 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 15085753 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAC 15085697 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15085696 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 15085637 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 15085636 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 15085577 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15085576 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 15085517 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15085516 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 15085457 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 15085456 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 15085405 >seq2 Length=14066726 Score = 291 bits (322), Expect = 3e-76 Identities = 240/289 (83%), Gaps = 24/289 (8%) Strand=Plus/Plus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5307810 ACTTACCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 5307869 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||| | |||| | | || || ||||||||||||||||| ||||| Sbjct 5307870 TCTTCTTTCCTTTCCCCTTCCCCGCCGTCCCTT-GGTTGGCTGTGGTTTCGCTGGATAG- 5307927 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5307928 -----GGGACAGTGGG---------AATCCATTCATGCGCGTCACTAATTAGATGACGAG 5307973 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG--CCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||| ||||| | | || || | || | || |||||||||||| Sbjct 5307974 GCATTTGGCTACCTT---AGAGT--TTGATAATCATGTTCCTTGTA-TCGCGCTTGGTTG 5308027 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5308028 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 5308076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635187359904