Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 163 2e-35 >seq5 Length=13709650 Score = 163 bits (180), Expect = 2e-35 Identities = 555/848 (65%), Gaps = 25/848 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 2138731 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCTCTCACAAGAC 2138672 Query 61156 ATGAATGACTGGGAGC---GTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | || |||||| || | | ||| ||| |||| || ||||| ||||| || | Sbjct 2138671 AACCGCGATTGGGAGAACAGTCTCAACGA-CGGCGAACGTCACTTCATCAAACACGTCCT 2138613 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| || || || ||||| ||||| |||||| | || ||| | Sbjct 2138612 CGCTTTCTTCGCTGCATCCGACGGAATCGTTTTAGAGAATCTCGCTTCTCGGTTCATGTC 2138553 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| ||||||||| |||||||| || || |||||| | Sbjct 2138552 CGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAGAATAT 2138493 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 || || |||||||| ||| |||| ||||||| ||||||| || || | || Sbjct 2138492 TCATTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGATAACAAAGAGAGAGA 2138433 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 | | ||| || || |||||||| || ||| | ||| |||||| | ||||| Sbjct 2138432 CCATCTCTTCCGCGCGATTGAGACGATTCCTTGCGTCGCGAA---GAAAGCTCAGTGGGC 2138376 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | || |||||| | | | | || |||| ||||||| | | || || || Sbjct 2138375 GATGAAATGGATCGACGG---ATCTCAGACCTTTGCTGAACGAATCGTTGCTTTCGCTTG 2138319 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || ||| | || ||| ||| || | | ||||| ||| | |||||||| || Sbjct 2138318 TGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTTAAGAAACGAGG 2138259 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 ||| ||||| || | || ||| || || ||||| || || ||||| ||| | || || Sbjct 2138258 ACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGACGAAGGCTTACACTG 2138199 Query 61629 TGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCG-TCCGTCG-GAGGAGCG 61685 || || || || | ||| | ||||| ||| || || | | | || ||||| Sbjct 2138198 CGACTTCGCGTGCCT---TATCTACACGCT-TCT--CAAAACGAAGCTTAGCGAAGAGCG 2138145 Query 61686 TGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTT 61745 ||| ||| || | || ||||| ||||| ||| ||| || ||||| | Sbjct 2138144 CGTGAAGTCGATCGTATGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCT 2138085 Query 61746 GCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGC 61805 || | | | | || ||||| | | ||| ||||||||||| ||||| || Sbjct 2138084 TCCTTGCGCGTTGGTTGGGATGAACCAGGATTTGATGAGTCAGTATATTGAGTTTGTAGC 2138025 Query 61806 CGACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864 || | || || ||| ||||||| | | | | ||| | || || || |||| Sbjct 2138024 GGATAGGCTTTTGGGTGCGCTTGGGTACG-GGAAGGTGTATGGTGTGACTAATCCTTTTG 2137966 Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924 ||| ||||| | || ||||| | || |||||||| || ||||||||||| || |||| Sbjct 2137965 ATTGGATGGAACTTATCTCGCTTCAAGGGAAGACGAACTTCTTCGAGAAACGCGTTGGCG 2137906 Query 61925 ACTATCAA 61932 | || ||| Sbjct 2137905 ATTACCAA 2137898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564254536720