Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq6 354 9e-93 seq2 131 2e-25 >seq6 Length=16577294 Score = 354 bits (392), Expect = 9e-93 Identities = 495/689 (72%), Gaps = 4/689 (1%) Strand=Plus/Minus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || || || ||| ||| | ||| Sbjct 1968776 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTCCCTTGTGCCTATTTCGCT 1968717 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | ||| Sbjct 1968716 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 1968657 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || |||||| ||||| ||| | | Sbjct 1968656 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 1968597 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | |||||| || || || || ||||||||||| || ||||| ||||| | || Sbjct 1968596 TTAGCGCATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 1968538 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843 | ||| | || || || ||| |||||| || |||||||| |||||||| | || || Sbjct 1968537 GTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 1968478 Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902 || ||| | |||||||||||||||||||| ||| || | | || ||||| ||||| | Sbjct 1968477 TTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 1968419 Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962 | || ||||||||||| |||||||||||||| ||||| || || ||||| || || | Sbjct 1968418 TCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTC 1968359 Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022 | || |||||||| ||||| ||||| || || ||||| || | ||| | || | Sbjct 1968358 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATTCTCT 1968299 Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082 | | ||||| || || |||||||| | || || || || |||||||| ||||| ||| Sbjct 1968298 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTG 1968239 Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142 | |||| | ||| |||| | |||||||| |||| ||||| ||||| || | | Sbjct 1968238 TACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 1968179 Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| |||||||| ||| |||||| || | || |||| || || |||| Sbjct 1968178 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 1968119 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGG 162231 | || ||||| || || ||||| || ||| Sbjct 1968118 ATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || || |||||||||||||| ||||| || | || || ||||| || ||||||||| Sbjct 1809292 TACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 1809233 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 |||| || | ||||||||||| ||| | ||| |||| || || ||||| || | Sbjct 1809232 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 1809173 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || |||| |||| ||||| || ||||| | |||||||| || Sbjct 1809172 TTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACC 1809113 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 1809112 TCTGATGTTACCATT 1809098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551370672329400