Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq6 370 1e-97 >seq6 Length=16577294 Score = 370 bits (410), Expect = 1e-97 Identities = 497/690 (72%), Gaps = 6/690 (1%) Strand=Plus/Minus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || || || ||| ||| | || Sbjct 1968776 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTCCCTTGTGCCTATTTCGCT 1968717 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 1968716 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 1968658 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| || Sbjct 1968657 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 1968600 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 1968599 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 1968540 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||||||||||| || ||||||| ||||||| | || Sbjct 1968539 TGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 1968480 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || ||||||||| |||| || ||| | || || || ||||| Sbjct 1968479 GGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 1968420 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || || ||||||||||| |||||||| ||||| || ||||| || || || || || Sbjct 1968419 ATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGT 1968360 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || ||||| || || ||||| | | Sbjct 1968359 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATTCTC 1968300 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 1968299 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGT 1968240 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | || || | ||||| || || ||||||||||||||||| ||||| |||||||| ||| Sbjct 1968239 GTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 1968180 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 1968179 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 1968120 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGG 164603 || || |||||||| || |||||||| ||| Sbjct 1968119 TATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559322595493200