Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 6e-14 >seq5 Length=13709650 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || | ||||||||||| | ||| |||| |||| ||||| || Sbjct 9098336 GCCTGTAACGGAATCTTGTTCAATCACGAGTCACCTCGCCGAGGTGAGAACTTCGTGACC 9098277 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | |||||| |||||||| | || | || || | || || | || ||| Sbjct 9098276 AGGAAGATCACAAGAGCCTTGGGAAGGATCAAGGTTGGTTTGCAGAGGAAGCTCTTCCTT 9098217 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || || | | || | | || |||||| || ||||||||| ||||| |||||| Sbjct 9098216 GGGAATTTGCAGGCAGCAAGGGATTGGGGATTTGCAGGAGACTACGTGGAGGCAATGTGG 9098157 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||||| ||||||||||||||||||||||| || | ||||| Sbjct 9098156 TTGATGCTGCAGCAAGAGAAGCCAGATGATTACGTCGTGGCAAC 9098113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691452518775480