Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq3 663 0.0 >seq3 Length=261510930 Score = 663 bits (734), Expect = 0.0 Identities = 370/372 (99%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236038836 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 236038777 Query 336 AGCAGCCCCATTTCGGCTAAAGTGGAGATGGATCAAACAACAATGAAGATGGAGGTTTCT 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236038776 AGCAGCCCCATTTCGGCTAAAGTGGAGATGGATCAAACAACAATGAAGATGGAGGTTTCT 236038717 Query 396 TCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCCTTATATGAT 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236038716 TCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCCTTATATGAT 236038657 Query 456 TTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAGCCGATGAAG 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236038656 TTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAGCCGATGAAG 236038597 Query 516 GTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAGAGTAAAGTG 575 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 236038596 GTTGAATCTGAGGTCAAGAGGAGGCCTGATGTATCTGAATTTACTATGGAGAGTAAAGTG 236038537 Query 576 GAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGTAGTATTCAT 635 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 236038536 GAAGTGAATTCACCTAAGAAGGAAACTTCTACTGTTGTTGCAGCGGAGAGTAGTATTCAT 236038477 Query 636 GAGGTTGCTGCT 647 |||||||||||| Sbjct 236038476 GAGGTTGCTGCT 236038465 Score = 421 bits (466), Expect = 3e-115 Identities = 236/238 (99%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236039151 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 236039092 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGAGTCATCATGGACCT 158 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236039091 CCTGAAGAGCTAGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGAGTCATCATGGACCT 236039032 Query 159 TCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAACAGATCC 218 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 236039031 TCCAAAAAAGATACAAGTGTGACAAATGATAGTACAAGAGAAGTTAATAATAACAGATCC 236038972 Query 219 AGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGCTGCTG 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236038971 AGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGCTGCTG 236038914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1964767033726