Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= AAMG01001232.1 Length=307 Score E Sequences producing significant alignments: (Bits) Value seq1249 304 2e-80 >seq1249 Length=14747 Score = 304 bits (336), Expect = 2e-80 Identities = 251/306 (82%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 2 GAAATCGACGATAAAGAAGTCACACTCGCCCACGGCCCCTTCAAGACACTGGGCATGCAG 61 || ||| |||| ||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 4982 GAGATCAACGACAAAGAAGTCACGCTCGCCCATGGCCCCTTCAAGACGCTGGGCATGCCT 5041 Query 62 GGCATGACGATGACGTTTCCACTTGCCAATCCTACCCTGATTCAGGGTCTGAAAACGGGC 121 ||||||||||||||||| || || |||| ||| | ||||| ||||| || || | || Sbjct 5042 GGCATGACGATGACGTTCCCTCTCGCCAGTCCGGCGCTGATGCAGGGCCTCAAGGCTGGT 5101 Query 122 GACAAGGTTCGGGTCGCGGTGAGCCAAACCGACGATGGATTGCGTGTCGAACGTCTAGAT 181 |||||||||||||||||||||||||| ||||| ||||| ||||||||| | || || | Sbjct 5102 GACAAGGTTCGGGTCGCGGTGAGCCAGACCGATGATGGCTTGCGTGTCCAGCGCCTGAGT 5161 Query 182 AAAACGGGAGGTCAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTT 241 ||| |||| | |||||||||| || || ||||| |||||||| || |||||||| || Sbjct 5162 AAATCGGGGAGCCAGCCATGATTGCAGCTCTCATTCGTTGGTCGGTGGCCAACCGATTCC 5221 Query 242 TGGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCAGAACACAC 301 ||||||| |||||||||| |||||||| |||||||| || ||||| || |||| ||| | Sbjct 5222 TGGTGCTACTGGCGACACTGTTCGTCACGGCTTGGGGTATTTGGTCGGTGCAGAGCACGC 5281 Query 302 CAATCG 307 | |||| Sbjct 5282 CCATCG 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 879985682400