Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq11 78.8 9e-13 seq1627 75.2 1e-11 seq12 75.2 1e-11 >seq11 Length=220335243 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||| |||||||||||| || | | | |||||||||| |||| ||||| |||| Sbjct 219764633 GTTGAGCAATGGCCCTTCCACTCGGCATCGTCGGATCACTAAGACCGACTTTCATCCCTG 219764574 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 219764573 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 219764528 >seq1627 Length=511530 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 64138 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 64079 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 64078 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 64030 >seq12 Length=229934170 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | ||| |||| |||||| | ||| |||||| ||| Sbjct 53112498 GTTGAGCGATGGCCCTTCCACTTGGCACCGCCGGGTCACTAAGGCCTACTTTCGTCCCTA 53112557 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| | || || |||| Sbjct 53112558 CTCGATGGGTGGGTCTTGCAGTCAAGCTCTCTTCTACCTTTTCACT 53112603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473592535324