Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 219 3e-52 >seq2 Length=163962470 Score = 219 bits (242), Expect = 3e-52 Identities = 591/886 (67%), Gaps = 20/886 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| ||||| || || || Sbjct 163232698 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTATAAGAAAGCCA 163232756 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || || ||||| | || || |||||||| || || | | ||||||| Sbjct 163232757 TGGCATCTTTTTGGACTGCTGAAGAAGTCGATTTATCGGCCGATACCCGTCACTGGGAAA 163232816 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 | | || ||||||| || || || | || ||| | ||||||||||| || |||| Sbjct 163232817 ATCTGACGTCCGGTGAAAGGCACTTTATCACTCACGTGCTTGCGTTCTTTGCAGCATCGG 163232876 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 | |||||||| |||||| | ||| | ||| | | | || |||||||| | ||| Sbjct 163232877 ATGGTATCGTTTTGGAGAATCTCGCTGGGAGGTT-CATGAAAGATGTGCAAGTTGCTGAG 163232935 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 |||||| |||||| || || || ||||| || |||||| |||| || |||||||||||| Sbjct 163232936 GCGCGTGCTTTCTATGGATTTCAAATTGCTATTGAGAATATCCATTCTGAGATGTACAGT 163232995 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC-GATTGTTCAATGCCAT 61409 | || | || ||||||||| ||| | ||| |||| | |||||| || || Sbjct 163232996 TTGCTGTTGGAGTCGTACATCAAGGATTCTGATGAA-AAGAACAGGTTGTTCCGCGCAAT 163233054 Query 61410 CGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTA 61468 ||||| || || ||| || || ||| ||| | ||||| || |||||| || Sbjct 163233055 TGAGACTATCCCTTGCGTTG-AGAAGAAGGCGAAATGGGCTCTCCGTTGGATTGAAGGT- 163233112 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 ||| || |||| ||| || ||| |||| ||||| || || || | || ||| Sbjct 163233113 --TCGGAGACTTTTGCTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCT 163233170 Query 61529 GTGGATCGTTTGCCG--CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 |||| |||| | | | || ||||||||||| || | || | ||||| || | || Sbjct 163233171 CTGGA-AGTTT-CTGTTCGATATTTTGGTTGAAAAAGAGAGGGTTAATGCCTGGATTAAC 163233228 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 |||| ||||||||||| || | ||||| || |||| |||||||||||| ||||| Sbjct 163233229 CTTCTCAAATGAGTTGATTTCGAGGGACGAAGGTTTGCACTGTGATTTTGCTTGCTTGCT 163233288 Query 61647 ATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGA 61706 | || | | ||| || | || | |||||| ||| | | |||||| ||| Sbjct 163233289 TTACA---GTTTGCTGAGGACGAAGCTCTCCGTGGAGCGAGTGAGGGGAATTGTTGCTGA 163233345 Query 61707 GGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCAT 61766 || || ||| ||| ||| ||| || ||| || ||||| | | | || || Sbjct 163233346 CGCCGTGGATATAGAAAGGGAGTTTGTGTGTGATGCCTTGCCTTGTGCTTTGGTGGGAAT 163233405 Query 61767 GAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTT 61826 |||| | | | ||| | || ||||||||||| || || | |||| | || ||| Sbjct 163233406 GAATGGAGATTTGATGAGTAAATACATTGAATTTGTGGCTGATAGATTGTTAGACGCTTT 163233465 Query 61827 GGG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 ||| |||| || ||| |||||| | | || |||||||||| ||||| ||||| Sbjct 163233466 GGGTTATG-AGAAGATGTATAATGCACAGAATCCATTTGATTGGATGGAGCTGATTAGCT 163233524 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | | || ||||||||||| || ||||| | || || || ||||| Sbjct 163233525 TACAAGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 163233570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560116599280