Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1727 398 1e-108 seq5242 392 5e-107 seq7581 379 3e-103 seq3516 372 5e-101 seq3765 316 3e-84 seq15742 228 1e-57 seq9231 206 4e-51 seq3366 145 1e-32 seq3494 123 4e-26 >seq1727 Length=11058 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 6032 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 6089 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6090 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 6149 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 6150 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 6209 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 6210 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 6269 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 6270 GCCATAGTCCCTCTAA 6285 >seq5242 Length=1196 Score = 392 bits (434), Expect = 5e-107 Identities = 243/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | Sbjct 492 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTATTAGGAATT-C 549 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 609 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 610 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 669 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 670 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 729 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 730 GCCATAGTCCCTCTAA 745 >seq7581 Length=1513 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 703 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 646 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 CTCGTTGAAAACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 586 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 585 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 526 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct 525 CCCACAACATCTAACGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 466 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 465 GCCATAGTCCCTCTAA 450 >seq3516 Length=6239366 Score = 372 bits (412), Expect = 5e-101 Identities = 231/245 (94%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| | Sbjct 2422287 GTACAAAGAGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTAGGAATT-C 2422230 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2422229 TTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2422170 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2422169 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2422110 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| | Sbjct 2422109 CCCAGAACATCTAAGGGCATCACAGACTTGTTATTGCCTTAAACTTCCTTGGCCTAAGCG 2422050 Query 241 GCCAT 245 ||||| Sbjct 2422049 GCCAT 2422045 Score = 318 bits (352), Expect = 9e-85 Identities = 228/257 (89%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||||||||||||||||||| |||||| | | ||||||||||||| | Sbjct 2669763 GTACAAAGGACAGGGACGTAGTCAACGCGAGCT-GATGACGCACACTTACTAGGAATT-C 2669706 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| Sbjct 2669705 CTCGTTGAAGACCAACAATTACAATGATCTATCTCCATCACGATGAAATTTTAAAGATTA 2669646 Query 121 CCCGGACCT-GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| || ||| ||| ||| ||| |||||||||||||||||||||||||| ||| | Sbjct 2669645 CCCGGGGCTTGTCAGCCTAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCATGTGTG 2669586 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| Sbjct 2669585 GCCCAGAACATCTAAGGGCATCATAGACTTGTTATTGCCTCAAACTTCCTTCGCCTAAGT 2669526 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 2669525 GGCCATAATCCCTCTAA 2669509 >seq3765 Length=752 Score = 316 bits (350), Expect = 3e-84 Identities = 220/246 (89%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT-T 59 || ||||||||||||| ||||| ||||||| | || |||||||| | |||||| || | Sbjct 44 GTCCAAAGGGCAGGGAACTAGTCCACGCGAGAT-GACGACTCGCGGATGCTAGGAGTTCT 102 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 |||| |||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 103 CCTCC--GAAGACCAACCATGGCAATGATGTATCCCCATCACGATGAAATTTCAAAGATT 160 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 161 ACCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 220 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 221 GCCCAGAACATATAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGC 280 Query 240 GGCCAT 245 |||||| Sbjct 281 GGCCAT 286 >seq15742 Length=592 Score = 228 bits (252), Expect = 1e-57 Identities = 135/138 (98%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 457 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 514 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 574 Query 121 CCCGGACCTGTCGGCCAA 138 ||||| |||||||||||| Sbjct 575 CCCGGGCCTGTCGGCCAA 592 >seq9231 Length=1709 Score = 206 bits (228), Expect = 4e-51 Identities = 131/141 (93%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1709 GATTACCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCG 1650 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1649 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCT 1590 Query 236 AAAAGGCCAT-CTCCCTCGAA 255 || |||||| |||||| || Sbjct 1589 AAGCGGCCATAGTCCCTCTAA 1569 >seq3366 Length=527904 Score = 145 bits (160), Expect = 1e-32 Identities = 151/193 (78%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 47 TTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGA 106 |||||||||||||| || ||||||||||| |||| ||||||| | |||||||| ||| Sbjct 125219 TTACTAGGAATTTC-TCATTGAAGACCAATAATTACAATGATTT---CCCATCACATTGA 125164 Query 107 AATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTG 166 |||||| ||| |||| | || ||| | | ||| |||||| |||||||||||| Sbjct 125163 AATTTCGAAGGTTACTTGATTCT-TCGCCTATTATGA---ACTCGTCGAATACATCAGTT 125108 Query 167 TAG--CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 || || || ||||||||| ||||||||| ||||||||| | ||||| |||||||||| Sbjct 125107 TATATCGTGCATGCGGCCCATTACATCTAAGAGCATCACAGGCTTGTTACTGCCTCAAAC 125048 Query 225 TTCCGTGGCCTAA 237 || | ||| |||| Sbjct 125047 TTTCTTGGTCTAA 125035 >seq3494 Length=2094846 Score = 123 bits (136), Expect = 4e-26 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||| ||||||||||||| |||| || |||||| |||||||||| |||||||| | Sbjct 747349 ACTCGTTGAGTACATCAGTGTAGTGCGCATGGGGCCCAAAACATCTAAGAGCATCACAAA 747408 Query 207 CCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||| |||||||||||||||||| |||||||| Sbjct 747409 CCTATTATTGCCTCAAACTTCCTTGGCCTAA 747439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751870589260