Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3135 125 2e-26 seq3412 105 2e-20 >seq3135 Length=45773 Score = 125 bits (138), Expect = 2e-26 Identities = 226/329 (69%), Gaps = 5/329 (2%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 |||||| || | ||||||| ||||||||||||||| |||||| ||| | ||| ||||| Sbjct 26925 GAATAACCATCAGCTAACTCTGTGCCAGCAGCCGCGATAATACAGAGGATACAAACGTTA 26984 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 ||||||| | ||| ||||||| | | ||| || | | ||| | | || | ||| | Sbjct 26985 TTCGGAATGATTGGATGTAAAGCATCTGTAGGTGGCTTTTTAATTCCGTCGTCACATCTC 27044 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT- 189 ||| || | ||| || | | ||| | || |||| ||| |||| Sbjct 27045 ATAGCTCAATCCTGGACAAACAGTGGAAACTACCAAGCTGGAGTA---CAGTAGGGGTAA 27101 Query 190 -GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 |||||| || || ||| | ||||| |||| | || | | ||||||||| |||||| | Sbjct 27102 AGGAATTTCAAATGGAGCGGCGAAATACGTAAAGATCGGAAAGAACACCAACGGCGAAAG 27161 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 || | |||| ||| |||||| || | ||||||| || | || || ||||||| Sbjct 27162 CATTCTGTTGGGCTAATACTGACACTGAGAGACGAAAGTTAGGAGGGCGAATGGGATTAG 27221 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||| ||| |||||||| Sbjct 27222 ATACCCTAGTAGTCATAGCCGTAAACGAT 27250 >seq3412 Length=755790 Score = 105 bits (116), Expect = 2e-20 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||| | ||||||||||||||| |||||| || ||||||||||| Sbjct 407579 GAATAAGCATCGGCTAATTCTGTGCCAGCAGCCGCGATAATACAGGGGATGCAAGCGTTA 407520 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA-TCC 129 |||||| | |||||||||||||| | ||| || | | |||| | | || ||| ||| Sbjct 407519 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGTCGTCAAATTCC 407460 Query 130 CCGGGCTTAACCTGG 144 | || || || |||| Sbjct 407459 CAGGACTCAAGCTGG 407445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289370915456