Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3353 120 4e-25 seq8269 109 8e-22 seq3000 98.7 1e-18 seq3466 84.2 3e-14 seq3396 73.4 5e-11 >seq3353 Length=531347 Score = 120 bits (132), Expect = 4e-25 Identities = 167/232 (72%), Gaps = 23/232 (10%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 ||||||| ||||| || |||||| | ||||| | ||| || ||||||||||||| || Sbjct 272039 GGGCAGGGGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGT 271981 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 |||||||||| || || |||||||| || | || || Sbjct 271980 AAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT-------------TTGTG----AGG 271938 Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || |||||||||||||||||||||||||| |||||||||| ||||||| | |||| Sbjct 271937 AG--GCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCTTACAGAGAGTTG 271880 Query 198 ACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || |||| || ||||||||| ||| |||||||||||||||| |||| Sbjct 271879 TCTCG--CGCCCTAGGTATTCTCTGCCTACCCACCTGTGTCGGTTTCGGGTA 271830 >seq8269 Length=1593 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 497 GGCACCCCTTCTCCCGAAGTTACGGGGATATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 556 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 557 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 604 >seq3000 Length=32783 Score = 98.7 bits (108), Expect = 1e-18 Identities = 174/251 (69%), Gaps = 26/251 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| || ||||||| || || |||||| | ||||| | || || Sbjct 8486 CTTAACCTTCCGGCACTGGACAGGCGTAAGCCCCCATACATGGTCTTACGATTTT-GCGG 8544 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCC---CTCTATTCTCTGCGACCACCACCAGC 117 ||||||||||||| |||||||||||| || || | || || ||||| || Sbjct 8545 AGACCTGTGTTTTTGGTAAACAGTCGC--CCGGGCT-TGGTCACTACGACCCCCT----- 8596 Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | || || || |||||| ||||||| |||||| ||| | |||||||| Sbjct 8597 --------TTGTG----AGGAG--GCACCCTTTCTCCCAAAGTTATGGGACTATTTTGCC 8642 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || ||||||| | |||| | || | ||| ||||||||||||| |||||| |||| Sbjct 8643 GAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTATCCACCTATGTC 8702 Query 238 GGTTTACGGTA 248 |||| |||| Sbjct 8703 TGTTTTGGGTA 8713 >seq3466 Length=1606384 Score = 84.2 bits (92), Expect = 3e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 149 TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCC 208 ||||||||||||||||||| |||||||||||||||||| | | || | | || Sbjct 394335 TTCTCCCGAAGTTACGGGGTTATTTTGCCGAATTCCTTAGAGAGAATTGTCTTACGCCCC 394276 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | |||||||||||||| |||||||||| ||||| Sbjct 394275 TAAGTATTCTCTACCTACCCACCTGTGTTGGTTT 394242 >seq3396 Length=760493 Score = 73.4 bits (80), Expect = 5e-11 Identities = 72/93 (77%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||| |||||||||| |||||| ||| |||||||||| ||||||| | |||| | Sbjct 601079 GGCATCCCTTCTCCCAAAGTTATAAGGCTATTTTGCCGAGTTCCTTAGAAAGAGTTGTCT 601020 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 || | ||| ||||||||||||| ||||||| Sbjct 601019 CGTGCCCCTAGGTATTCTCTACCTACCCACCTG 600987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694280501572