Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq3353 96.9 4e-18 seq8269 84.2 2e-14 seq3000 75.2 1e-11 seq3378 73.4 4e-11 >seq3353 Length=531347 Score = 96.9 bits (106), Expect = 4e-18 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | |||| |||||||||||| || |||| ||| | || ||| | Sbjct 271890 TAAGGAACTCGGCAAAATAACCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 271947 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 271948 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 271997 >seq8269 Length=1593 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 543 TAAGGAACTCGGCAAAATATCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 486 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 | || ||||| || ||| || ||| |||||||| |||| ||||| Sbjct 485 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAATACACA 441 >seq3000 Length=32783 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | || |||||| |||| ||||||| ||| | || ||| || Sbjct 8652 TAAGGAACTCGGCAAAATAGTCCCATAACTTTGGGAGAAAGGGTGCCTCCTCACAAAGGG 8593 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | || || || | | || ||| |||||||| |||||||||||| || Sbjct 8592 G--GTCGTAGTGACCAAGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 8545 >seq3378 Length=693311 Score = 73.4 bits (80), Expect = 4e-11 Identities = 85/112 (76%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 79 TTAAGGAACTAGGCAAACTGA-CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAAT 137 |||||||||| | |||| | ||| ||||||| ||| ||||||| ||| | || ||| Sbjct 500191 TTAAGGAACTCGACAAAAATAGCCCCATAACTTCAGGAGAAAGGGTGCCTCCTCAAAAA- 500133 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||||| |||| || | | || ||| ||||| || |||||||||||| || Sbjct 500132 GGGAGGTTGCAGTGATGAAGCCCGGGCGACTGTCTACCAAAAACACAGGTCT 500081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531108586456