Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3396 170 5e-40 seq3389 122 2e-25 seq1442 102 2e-19 seq3000 96.9 9e-18 seq3353 82.4 2e-13 seq8269 77.0 8e-12 seq3506 75.2 3e-11 seq3192 73.4 1e-10 >seq3396 Length=760493 Score = 170 bits (188), Expect = 5e-40 Identities = 287/418 (69%), Gaps = 28/418 (7%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| || ||| | ||||||| ||| ||||||| Sbjct 601384 CATCTTCACAGGCATGTCTATTTCACCAAGACTCTCTTCGAGACAGTGCCCAGATCGTTA 601325 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| |||||| |||| ||||||||||||||||| |||||| ||||||||| | |||||| Sbjct 601324 CGCCTTTCGTGTAGGTTGGAACTTACCCGACAAGAAATTTCACTACCTTAGCATCGTTAT 601265 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATC----AAGAGCTTCGCGTTAGCTAACCCC 189 |||| ||| |||||| ||| ||||||||||| | | | | |||| | ||| Sbjct 601264 AGTTATGGCTGCCGTTCACCAGGGCTTCGATCGTCGACTCCCCTGTCATTAGGTCACCAA 601205 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCA-CACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| ||||| | | | | ||| ||| | ||| || ||| Sbjct 601204 CTTCCTTGACCTTCCGGCACTAGGCAGACATTAGCCCCCCATATATGGTCTTACGACTTT 601145 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || |||||||||| |||||||| || ||| |||| || || || Sbjct 601144 GCGGATATCTGTGTTTTTGGTAAACAGTTGCCCGGGCTTGGT------CACTGGGATCCC 601091 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || |||| | ||| ||||||||| |||||| || || Sbjct 601090 TTTTGGGAGGA-----------------GGCATCCCTTCTCCCAAAGTTATAAGGCTATT 601048 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 601047 TTGCCGAGTTCCTTAGAAAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCAC 600990 >seq3389 Length=699234 Score = 122 bits (134), Expect = 2e-25 Identities = 191/271 (70%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || ||| |||||||||| || | |||||| ||| | |||| || | Sbjct 15052 GCGGGTAGTCTGTATCTTCACAGACATGTTTATTTCATCGAGCCCTTATCCGAGATAGTG 15111 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||| |||||||||| ||| ||||||||||||| ||||||| |||||||||||| Sbjct 15112 CCTAGATCATTACGCCATTTGTGTGGGTCGGAACTTACTCGACAAGATATTTCGCTACCT 15171 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180 ||||||| |||| |||||| || ||||||| | |||||| ||| ||| | | || | Sbjct 15172 TAGGACCATTATAGTTACGACCACCGTTTATTAGAGCTTCGGTCACCGGCTCCCCTGTCA 15231 Query 181 GCTAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 | | ||| || || || || || || ||| |||||||| |||||||| | Sbjct 15232 --TCAGGTCATTAACTTCCTTGACTTTTCGACATTGGGTAGGCGTCAGCCCCTATACATG 15289 Query 236 CACTTTCGTGTTTGCAGAGTGCTGTGTTTTT 266 ||| || |||||||| ||| ||||| Sbjct 15290 GTCTTACGACTTTGCAGATACTTGTATTTTT 15320 >seq1442 Length=9076 Score = 102 bits (112), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || |||| || ||| || |||| || | Sbjct 8864 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTTACCGAGCTTCTCTCCGAGATAGTG 8923 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || | ||| ||| ||| |||||| | ||| || ||||||| |||||||||||| |||||| Sbjct 8924 CCCCGATCATTATGCCTTTCGTGTACGTCAGA-CTTACCCAACAAGGAATTTCACTACCT 8982 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 || ||||||||| ||||| || || ||| || ||||||| Sbjct 8983 TA-GACCGTTATAGTTAC-GCTGCTGTTCAC--AGGCTTCG 9019 >seq3000 Length=32783 Score = 96.9 bits (106), Expect = 9e-18 Identities = 209/314 (67%), Gaps = 29/314 (9%) Strand=Plus/Plus Query 117 TACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC 176 |||||| ||||||||| |||||| | | |||| || |||||||| | ||| | | Sbjct 8407 TACCTT--GACCGTTATAGTTACGACTGTCGTTCACTGGGGCTTCAGTTGCCGGCTCCCC 8464 Query 177 GTT----AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | || | ||| | ||||||||||||||| || ||||||| | ||| |||| Sbjct 8465 TGTCATCAGGTCACCGACTTCCTTAACCTTCCGGCACTGGACAGGCGTAAGCCCCCATAC 8524 Query 233 GTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | ||| || ||||| ||| |||||||||| ||||||||||| ||| |||| Sbjct 8525 ATGGTCTTACGATTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCTTGGTCA 8584 Query 293 CTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCG 352 || ||||| ||| ||| | | |||||| ||||||| Sbjct 8585 CTACGACC------CCCTTTGTGAGGAGG-----CACCCT------------TTCTCCCA 8621 Query 353 AAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATT 412 |||||| || | ||||||| |||||||| ||||| |||| || ||| |||||| Sbjct 8622 AAGTTATGGGACTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATT 8681 Query 413 CTCTACCCAACCAC 426 ||||||| | |||| Sbjct 8682 CTCTACCTATCCAC 8695 >seq3353 Length=531347 Score = 82.4 bits (90), Expect = 2e-13 Identities = 147/216 (68%), Gaps = 24/216 (11%) Strand=Plus/Minus Query 211 GGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATA 270 ||||||| |||| ||| |||| | ||| || ||||| ||| |||||||||| || Sbjct 272039 GGGCAGGGGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTA 271980 Query 271 AACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACC 330 ||||||||| |||||||| || ||||| | || ||| | | Sbjct 271979 AACAGTCGCCCGGGCCTGGTCACTGCGACCCCC------TTTGTGAGGAGG--------- 271935 Query 331 CTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAG 390 |||| ||||||||||||||||||| | ||||||| |||||||| | ||| Sbjct 271934 --CACC------CCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCTTACAGAGAG 271883 Query 391 TTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 || |||| || ||| |||||||||| || | |||| Sbjct 271882 TTGTCTCGCGC-CCTAGGTATTCTCTGCCTACCCAC 271848 >seq8269 Length=1593 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| | ||||||| |||||||| ||||| ||| Sbjct 497 GGCACCCCTTCTCCCGAAGTTACGGGGATATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 556 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 557 CGCGCCCCTAGGTATTCTCTACCTACCCAC 586 >seq3506 Length=3249968 Score = 75.2 bits (82), Expect = 3e-11 Identities = 103/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || || ||||||| |||||| || ||| ||| || || Sbjct 2056711 TGCATCTTCACATACATGTCTATTTCACAAAGTCTCTCTCTGAAACAATGCCCAGATTGT 2056770 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||| | |||| |||||| || ||||| ||| | ||||||| || || Sbjct 2056771 TACGCCTTTCGTACGGGTCAAAACTTAATTGATAAGGAGTTTTGTTACCTTATAACTATT 2056830 Query 132 ATTGTTACGGCCGCCGTTTACCGG 155 || ||||| | |||||||||| Sbjct 2056831 ATAGTTACAGTTATCGTTTACCGG 2056854 >seq3192 Length=109950 Score = 73.4 bits (80), Expect = 1e-10 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 ||||||||| |||||||||||| |||| |||| ||| |||| ||||||||| |||| || Sbjct 265 AACTTACCCAACAAGGAATTTCACTACTTTAGTACCATTATAGTTACGGCCACCGTCCAC 324 Query 153 CGGGGCTT 160 | | |||| Sbjct 325 CAGTGCTT 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260576031488