Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3396 224 2e-56 seq3389 174 3e-41 seq3000 170 4e-40 seq3353 154 3e-35 seq3192 147 5e-33 seq8269 129 1e-27 seq3499 116 8e-24 seq3378 104 5e-20 seq1442 104 5e-20 seq3509 102 2e-19 seq3457 93.3 9e-17 seq3506 91.5 3e-16 seq3466 77.0 7e-12 >seq3396 Length=760493 Score = 224 bits (248), Expect = 2e-56 Identities = 272/366 (74%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| || || | |||||||| || || | | ||||||||||||| ||||||| Sbjct 601384 CATCTTCACAGGCATGTCTATTTCACCAAGACTCTCTTCGAGACAGTGCCCAGATCGTTA 601325 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||||||||||| ||| ||||||||||||||||| |||||| ||||||||| | |||||| Sbjct 601324 CGCCTTTCGTGTAGGTTGGAACTTACCCGACAAGAAATTTCACTACCTTAGCATCGTTAT 601265 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTT---AAGTTCACTGC---TTCGATTGCTCTAACA 181 ||||| ||| |||||| || |||||| || ||| | || | | || || Sbjct 601264 AGTTATGGCTGCCGTTCACCAGGGCTTCGATCGTCGACTCCCCTGTCATTAGGTC--ACC 601207 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAG-CTCCTATACATCGTCTTGCGACT 240 | |||| ||||||| |||| ||||| | | || | || ||| || ||||| ||||| Sbjct 601206 AACTTCCTTGACCTTCCGGCACTAGGCAGACATTAGCCCCCCATATATGGTCTTACGACT 601147 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG--GCCTGTC 298 | || || | |||||||||||||||||||| || |||| | || ||| | ||| | Sbjct 601146 TTGCGGATATCTGTGTTTTTGGTAAACAGTTGCCCGGGCTTGGTCACTGGGATCCCTTTT 601087 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATA 358 ||||| |||||||||| |||||| || |||||||||||||||||| || | Sbjct 601086 GGGAGGAGGCATCCCTTCTCCCAAAGTTATAAGGCTATTTTGCCGAGTTCCTTAGAAAGA 601027 Query 359 GTTCTC 364 ||| || Sbjct 601026 GTTGTC 601021 >seq3389 Length=699234 Score = 174 bits (192), Expect = 3e-41 Identities = 260/365 (71%), Gaps = 12/365 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | || |||||| |||| | | |||| |||||| | ||| |||| Sbjct 15065 ATCTTCACAGACATGTTTATTTCATCGAGCCCTTATCCGAGATAGTGCCTAGATCATTAC 15124 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 ||| || ||| |||||||||||||| ||||||| ||||||||||||||||||| ||||| Sbjct 15125 GCCATTTGTGTGGGTCGGAACTTACTCGACAAGATATTTCGCTACCTTAGGACCATTATA 15184 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC--- 185 |||||| || ||||||| | | |||| | |||| | || || || | ||| || Sbjct 15185 GTTACGACCACCGTTTATTAGAGCTT-CGGTCACCGGCTCCCCTG-TC-ATCAGGTCATT 15241 Query 186 ----CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 |||| || || | || ||| |||||||||| ||||||||| ||||| |||||| Sbjct 15242 AACTTCCTTGACTTTTCGACATTGGGTAGGCGTCAGCCCCTATACATGGTCTTACGACTT 15301 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTC--TCTGCGGCCTGTCA 299 ||||| || ||| |||||||| || ||| ||||| || | || || | | Sbjct 15302 TGCAGATACTTGTATTTTTGGTTAATAGTTATCCGGGCCAGGTCATTGTGACTCCCTTTA 15361 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || ||||||||||||| |||||| | | ||||| ||||||||||| | || Sbjct 15362 TAAGGAGGCACCCCTTCTTTTAAAGTTATGAGACTTTTTTGTGGAGTTCCTTAAAGAGAG 15421 Query 360 TTCTC 364 || || Sbjct 15422 TTGTC 15426 >seq3000 Length=32783 Score = 170 bits (188), Expect = 4e-40 Identities = 190/249 (76%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 111 TACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGA 170 |||||| |||||||||||||||| | | |||| |||||||||| |||| | ||| | Sbjct 8407 TACCTT--GACCGTTATAGTTACGACTGTCGTTCACTGGGGCTTCAGTTGCCGGCTCCCC 8464 Query 171 TTGC-TC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATAC 226 | | || | || || |||||||||||| |||| || ||||||| ||| || |||| Sbjct 8465 TGTCATCAGGTCACCGACTTCCTTAACCTTCCGGCACTGGACAGGCGTAAGCCCCCATAC 8524 Query 227 ATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCT 286 || ||||| ||| || || || ||||||||||||||||||||||||| |||| | || Sbjct 8525 ATGGTCTTACGATTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCTTGGTCA 8584 Query 287 CTGCG---GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 || || ||| | || |||||||| ||||||| |||||| ||| ||||||||| Sbjct 8585 CTACGACCCCCTTTGTGAG-GAGGCACCCTTTCTCCCAAAGTTATGGGACTATTTTGCCG 8643 Query 344 AGTTCCTTA 352 ||||||||| Sbjct 8644 AGTTCCTTA 8652 >seq3353 Length=531347 Score = 154 bits (170), Expect = 3e-35 Identities = 126/151 (83%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||| |||||| || |||||| ||||| |||||| || || |||||||||||||||| Sbjct 272039 GGGCAGGGGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTA 271980 Query 265 AACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGACAGGCACCCCTTCTCCCT 321 ||||||||| |||||| || ||||| ||| | || |||||||||||||||| Sbjct 271979 AACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG-GAGGCACCCCTTCTCCCG 271921 Query 322 AAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||| |||||||||||||||||| Sbjct 271920 AAGTTACGGGGTTATTTTGCCGAGTTCCTTA 271890 >seq3192 Length=109950 Score = 147 bits (162), Expect = 5e-33 Identities = 222/312 (71%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||||| |||||| |||| || | ||| ||| || | ||||||||| ||||||||||| Sbjct 226 AGACAATGCCCAGATCGCTAGACATTTTGTGAGGAATGAAACTTACCCAACAAGGAATTT 285 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 | |||| |||| ||| |||||||||||||| |||| || | |||| |||| ||| Sbjct 286 CACTACTTTAGTACCATTATAGTTACGGCCACCGTCCACCAGTGCTTTAGTTGTTGGCTG 345 Query 168 CGAT----TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTA 223 | | | | | || | |||| ||||||| | | ||||| |||| | || | Sbjct 346 CCCTGTCATCATGTCACCAACTTCCTTGACCTTCCGGTAGTAGGCAG--GTCAACCCCCA 403 Query 224 TACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTAT 283 ||||| ||||| ||||| ||||| |||| |||||||| |||| | || ||||| Sbjct 404 TACATGGTCTTATGACTTTGCAGAGACCTATGTTTTTGATAAA---TTGCCCAAGCCTAA 460 Query 284 TCTCTG---CGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTG 340 || || | ||| | ||| | |||||||||||||| |||||||||| | |||| Sbjct 461 TCATTGCAACTCCCTTTATGAGA-AAGCACCCCTTCTCCCAAAGTTACGGGACTACTTTG 519 Query 341 CCGAGTTCCTTA 352 ||||||||||| Sbjct 520 TCGAGTTCCTTA 531 >seq8269 Length=1593 Score = 129 bits (142), Expect = 1e-27 Identities = 119/149 (80%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 207 GCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAA 266 |||| |||||| || |||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 396 GCAGCGGTCAGCCCCCATACATGGTCTTAGGACTTTGCGGAGACATGTGTATTTGGTAAA 455 Query 267 CAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGACAGGCACCCCTTCTCCCTAA 323 ||||||| |||||| || ||||| ||| | || |||||||||||||||| || Sbjct 456 CAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG-GAGGCACCCCTTCTCCCGAA 514 Query 324 GTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||| |||||||||||||||||| Sbjct 515 GTTACGGGGATATTTTGCCGAGTTCCTTA 543 >seq3499 Length=2950495 Score = 116 bits (128), Expect = 8e-24 Identities = 125/160 (78%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 196 TCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTG 255 |||||||| ||||| |||||| ||||||||| ||||| || || |||||||||||| Sbjct 2603058 TCCAGCACTGGGCAAATGTCAGCCCCTATACATAGTCTTATGAATTTGCAGAAACCTGTA 2603117 Query 256 TTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCT-GTCAT-AGACAGGCACCC 312 ||||| |||||||||| | ||| || || ||| | ||| |||| ||| ||||||| Sbjct 2603118 TTTTTAGTAAACAGTCATTCAGGCTTAATCACTGTGATCCTCTTCATGAGA-AGGCACCT 2603176 Query 313 CTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||| |||||| || || ||||| | |||| |||| Sbjct 2603177 CTTCTCCCAAAGTTATGGAGTTATTTTACGTAGTTTCTTA 2603216 >seq3378 Length=693311 Score = 104 bits (114), Expect = 5e-20 Identities = 120/157 (76%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 209 AGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACA 268 ||| |||||| || |||||| ||||| |||||| | || |||||||||||||||| ||| Sbjct 500044 AGGTGTCAGCCCCAATACATGGTCTTACGACTTTGG-GAGACCTGTGTTTTTGGTAGACA 500102 Query 269 GTCGCTTGGGCCTATTCTCTGCGGCCT--GTCATAGA-CAGGCACCCCTTCTCCCTAAGT 325 ||||| |||| | || |||| ||| | | || |||||||| |||||| |||| Sbjct 500103 GTCGCCCGGGCTTCATCACTGCAACCTCCCTTTTTGAGGAGGCACCCTTTCTCCTGAAGT 500162 Query 326 TACGGGG-TCATTTTGCCGAGTTCCTTAACAATAGTT 361 || |||| | ||||| |||||||||||| | |||| Sbjct 500163 TATGGGGCTATTTTTGTCGAGTTCCTTAAAGAGAGTT 500199 >seq1442 Length=9076 Score = 104 bits (114), Expect = 5e-20 Identities = 111/143 (78%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||| |||||| | | |||| ||||||| ||| || Sbjct 8875 GCATCTTCACAGACATGTCTATTTTACCGAGCTTCTCTCCGAGATAGTGCCCCGATCATT 8934 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | |||||||||| ||| || ||||||| |||||||||||| |||||||| |||||||| Sbjct 8935 ATGCCTTTCGTGTACGTCAGA-CTTACCCAACAAGGAATTTCACTACCTTA-GACCGTTA 8992 Query 127 TAGTTACGGCCGCCGTTTACTGG 149 ||||||| || || ||| || || Sbjct 8993 TAGTTAC-GCTGCTGTTCACAGG 9014 >seq3509 Length=2695179 Score = 102 bits (112), Expect = 2e-19 Identities = 188/270 (70%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||| ||||| |||||||||| |||| | ||||||||||||| | | ||| || Sbjct 2136744 AACTTACCCAACAAGAAATTTCGCTATCTTATAATCGTTATAGTTACGACTGATGTTCAC 2136803 Query 147 TGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC-------TTAACCTTCCA 199 || ||| || | ||| | || || | |||||| || || || ||||| Sbjct 2136804 CTAGGTTTATGTCGCCAGCTCC--TTAGTC-ATCAGATCACCAACTTCCTTGAC-TTCCA 2136859 Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 |||| |||| || | | || |||||| ||||| || || |||| |||| ||||| Sbjct 2136860 GCACTTTACAGGGGTTAACCCCCATACATGGTCTTATGATTTTACAGAGACCTAAGTTTT 2136919 Query 260 TGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT-AGA-CAGGCACCCCTTCT 317 |||||||||||||| ||| | ||| || | | || |||||| | |||| Sbjct 2136920 TGGTAAACAGTCGCCCCAATCTAGTTGCTGTAATCTCTTTTGTGAGGAGGCACTCATTCT 2136979 Query 318 CCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 ||| ||||||| || | |||||||||| || Sbjct 2136980 CCCGAAGTTACAGGATTATTTTGCCGAATT 2137009 >seq3457 Length=1294296 Score = 93.3 bits (102), Expect = 9e-17 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||| || | || | ||| |||||||| || |||| ||||||| || ||| || Sbjct 59960 ATTTCACCTAGGCAATCTCTAAGATAGTGCCCAGATTGTTATGCCTTTCATGTCGGTTGG 60019 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCC 140 || ||||||||||| ||||| |||| |||| || ||||||||||| ||| || Sbjct 60020 AATTTACCCGACAAATAATTTTGCTATCTTATAACTGTTATAGTTACCGCCACC 60073 >seq3506 Length=3249968 Score = 91.5 bits (100), Expect = 3e-16 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||| ||||| | ||| ||| |||||| || ||| Sbjct 2056712 GCATCTTCACATACATGTCTATTTCACAAAGTCTCTCTCTGAAACAATGCCCAGATTGTT 2056771 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||| |||||| |||||| || ||||| ||| | ||||||| || ||| Sbjct 2056772 ACGCCTTTCGTACGGGTCAAAACTTAATTGATAAGGAGTTTTGTTACCTTATAACTATTA 2056831 Query 127 TAGTTACGGCCGCCGTTTACTGG 149 ||||||| | ||||||| || Sbjct 2056832 TAGTTACAGTTATCGTTTACCGG 2056854 >seq3466 Length=1606384 Score = 77.0 bits (84), Expect = 7e-12 Identities = 86/114 (75%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||| ||||| || |||||| ||||| |||| | || || ||||||| |||||||| Sbjct 400849 GGGCAGGTATCAGCCCCAATACATGGTCTTACGACGTTGCGGAGACCTGTGCTTTTGGTA 400790 Query 265 AACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA-CAGGCACCCCTTCT 317 |||||| || || ||| || |||| ||| | || ||||||| ||||| Sbjct 400789 AACAGTTGCCCGGACCTGGTCACTGCAACCTCTTTGTGAGGAGGCACCTCTTCT 400736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062211275264