Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3475 205 3e-50 seq3486 187 7e-45 seq3514 154 4e-35 seq3516 145 2e-32 seq1335 136 1e-29 seq7880 114 4e-23 seq3490 111 5e-22 seq3505 107 6e-21 seq1364 105 2e-20 seq15256 78.8 3e-12 >seq3475 Length=2139848 Score = 205 bits (226), Expect = 3e-50 Identities = 239/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 || ||| |||||||||||| |||||| |||| || |||| |||||| ||| ||||| Sbjct 684982 CGTAAGAATGAAACTCAAAGAAATTGATGGGGGCCTAGCCAAGTGGTGGAACATATGGTT 684923 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| | || | |||||| ||||| | |||||||| | | ||||| | | Sbjct 684922 TAATTCGATGTAAAGAGAAGAATCTTACTAGGGCTTGACATACCGCAAATCCTCTTAAAA 684863 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 |||| | || ||| || || || | ||||| || || |||||| ||| || ||| Sbjct 684862 GGGAGGGGTACC-TTCAGGA-ACGCAGACATAGGTGGTGAATAGTTGTCATCAACTTGTG 684805 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCAT 246 ||| || |||||||||||||| ||||||||| ||||| ||| | ||||||||||| | Sbjct 684804 CCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGTGCAACTCTTGTGTTTAGTTGCCATTGT 684745 Query 247 TAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTC 306 | |||| | ||||| | ||||| || ||| || | | ||||||||| ||| || ||| Sbjct 684744 TGAGTTTGAAACTCTGAACAGACTGTCGATGATAAGCTGAAGGAAGGTGAGGATGATGTC 684685 Query 307 AAATCATCATGCCCCTTATG 326 || ||||||||||||||||| Sbjct 684684 AAGTCATCATGCCCCTTATG 684665 >seq3486 Length=2184632 Score = 187 bits (206), Expect = 7e-45 Identities = 145/173 (84%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 194 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTG 253 |||||||||||||||||||||||||||||||||| | |||||||||| | || |||| Sbjct 1464204 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTT 1464145 Query 254 GGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCAT 313 || || || || ||||||||||| || ||||||||||||| ||| |||||||| |||| Sbjct 1464144 GGAACCCTGAGCATACTGCCGGTGATAATCCGGAGGAAGGTGAGGATGACGTCAAGTCAT 1464085 Query 314 CATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 ||||||||||||| | ||| |||||||||||||||||| | |||||||| Sbjct 1464084 CATGCCCCTTATGCCCTAGGCGACACACGTGCTACAATGGCCGGGACAAAGGG 1464032 >seq3514 Length=4646585 Score = 154 bits (170), Expect = 4e-35 Identities = 334/491 (68%), Gaps = 14/491 (3%) Strand=Plus/Plus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 |||| ||||||||||| || || || || || |||| ||| | ||| || |||| Sbjct 1497282 CAAGAATGAAACTCAAAAGAGTTTACAAGGGTCCATGTAAGCAGTGTAACATTTGATTTA 1497341 Query 69 ATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATA 128 ||| | |||| |||||| ||| | ||| |||| || ||| ||||| || | | Sbjct 1497342 ATTAAATGCAAAATGAAGAAT-TTAT--AGGCTTAACATTCTGTGAATCCTCTTGAAAGA 1497398 Query 129 GAGGTTTCCCCTTCGGGGGACAGAGTG-ACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 |||| | || || |||| | | | ||| | |||||||||||| ||| ||| || Sbjct 1497399 GAGGGGTGCCTTT---GGGAATGTGAACATAGGCGGTGCATGGTTGTCATCAACTCATGC 1497455 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247 | | | ||| ||||||||| |||| || | |||| || |||||||||| |||| Sbjct 1497456 TATAAAGTCTTGAGTTAAGTCCTGCAATGATCACAACTTTTGTATTTAGTTGCCACCATT 1497515 Query 248 AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCA 307 |||| || || |||| | || ||| ||| || || ||||| ||| ||| || |||| Sbjct 1497516 GAGTTTGGAACCCTAATTATGCTACCGATGATAAGTCGAAGGAAAGTGAGGATGATGTCA 1497575 Query 308 AATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGC 367 | |||||||||||||||| || ||| ||||| ||||||||| || ||||| || Sbjct 1497576 AGTCATCATGCCCCTTATAGCTTAGGCGACACATACACTACAATGGTCAGGACAAATGGT 1497635 Query 368 AGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGT-TGTTCTCAGTTCGGATTGTAGTCT 426 | | || ||| ||| || | | | | | | | |||| || ||||||| | | Sbjct 1497636 TGTAATCCCATAAGGGTGAGCTAA-CTTAAACATTCTATCCTCAATTTGGATTGTTGGTT 1497694 Query 427 GCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC---ATGCTACGGT 483 ||||||| | |||||||| |||| |||||||| ||| | | ||| | ||| Sbjct 1497695 GCAACTCCTTTGCATGAAGCTAGAATATTTAGTAATCACTGATAAACCATATGGT--GGT 1497752 Query 484 GAATACGTTCC 494 |||| |||||| Sbjct 1497753 GAATTCGTTCC 1497763 >seq3516 Length=6239366 Score = 145 bits (160), Expect = 2e-32 Identities = 144/184 (78%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||| ||||||||||| ||||||||| || || ||||||| ||| ||||| Sbjct 3191463 TACGTTCACAAGAATGAAACTCAAAAGAATTGACGAGGGCCTACACAAGCTGTGTAGCAT 3191404 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||| | |||| |||||||||||||||| |||||||| || || |||| Sbjct 3191403 GTGGTTTAATTCAATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCTGCGAATCCTC 3191344 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | ||||| ||| | | ||||||| ||||||| ||||||||| Sbjct 3191343 TTGAAAGAGAGGGGT-GCCTTC-GGGAATGCAAACACAGGTGGTGCATGGCTGTCGTCAG 3191286 Query 181 CTCG 184 |||| Sbjct 3191285 CTCG 3191282 >seq1335 Length=8281 Score = 136 bits (150), Expect = 1e-29 Identities = 162/215 (75%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 287 AGGAAGGTGGGGACGACGTCAAATCATCATGCCCC-TTATGATTTGGG-CTACACACGTG 344 ||||||||| ||| |||||||| ||||||| ||| ||||| | |||| | ||||||||| Sbjct 1789 AGGAAGGTGAGGATGACGTCAAGTCATCATACCCTATTATGCTCTGGGGCGACACACGTG 1730 Query 345 CTACAATGGACAATACAAAGGGCA--GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGT 402 |||||||||| | ||| | | || |||||||| ||| || ||| ||| Sbjct 1729 CTACAATGGATGTGAAAAAAGAGTTTGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACC 1670 Query 403 TGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 || ||||||||||||| || ||||||| | || ||||||| |||||||||| |||| Sbjct 1669 CGTCATCAGTTCGGATTGCAGGATGCAACTGGCCTGCATGAAGCCGGAATCGCTAATAAT 1610 Query 463 CGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 || | |||| ||| | |||||||| |||||||| Sbjct 1609 CGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 1575 >seq7880 Length=1546 Score = 114 bits (126), Expect = 4e-23 Identities = 208/300 (69%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 138 CCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGT 197 |||||||| || || ||||||| || |||| | |||| | |||||| || || ||| Sbjct 1248 CCTTCGGGA-ACGCAGACACAGGTGGTGTATGGCTATCGTTAACTCGTGATGTAAGGTGT 1306 Query 198 TGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCA 257 |||||||||||| | | || |||||||| |||||| ||| || |||| | | Sbjct 1307 TGGGTTAAGTCCTACGATAAGTGCAACCCTCGTATTTAGTTTCCACTGTTGAGTTTGTAA 1366 Query 258 -CTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCAT 316 |||| | |||| | || | || | | ||||| || ||| || ||||| ||||||| Sbjct 1367 TACCTAAATAGACTATCAGTAATAAGCTGAAGGAAAGTAAGGATGATGTCAAGTCATCAT 1426 Query 317 GCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACC 376 ||| ||||| || ||| | | || ||||||||||| | | |||| | || |||| Sbjct 1427 GCCTTTTATGTCTTAGGCGATAGACATGCTACAATGGTTAGAATAAAGCGTTGC--AACC 1484 Query 377 GC--GAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 || ||| ||| || ||| ||| | || ||| ||||||| || |||||||||| Sbjct 1485 GCATGAGAGTGAGCTAACTCCAAAAATTCGTCTTCAACTCGGATTACAGGCTGCAACTCG 1544 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||||||||| |||||| |||||||| |||||||| |||| |||||||| ||||| | Sbjct 1040 TGAAACTCAAAGAAATTGATGGGGACCCACACAAGCGATGGAACATGTGGTCTAATTTAA 1099 Query 75 AG--CAACGCGAAGAACCTTACCA 96 | || | |||||||||||| Sbjct 1100 CGTATAAAGTAGAGAACCTTACCA 1123 >seq3490 Length=2069338 Score = 111 bits (122), Expect = 5e-22 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 163 ATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCA 222 || ||| |||| |||||||||| |||| || ||||||||||||| | | |||||| ||| Sbjct 992823 ATACATAATTGTTGTCAGCTCGTATCGTAAGGTGTTGGGTTAAGTTCTGTAACGAGTGCA 992764 Query 223 ACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAA 282 ||||| | |||||||||||| || | || | || ||| || ||| ||| || Sbjct 992763 ACCCTCGTGTTTAGTTGCCATCGTTGAATTTAGAACCTTAAACGTGCTACCGATGATAAG 992704 Query 283 CCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACG 342 | |||||||||| | | ||| || | |||| ||||| ||||| || ||||| | Sbjct 992703 CTCGAGGAAGGTGAGAATGACATCGAGTCATTATGCCTCTTATACCCTGAATGACACAAG 992644 Query 343 TGCTACAAT 351 ||||||||| Sbjct 992643 TGCTACAAT 992635 >seq3505 Length=2969368 Score = 107 bits (118), Expect = 6e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||||||||||| ||||||| || | |||||||||||| |||||| Sbjct 933993 ACAGGTGGTGCATGGTTGTCGTCAGCTTGTGTCGTAAGGTATTGGGTTAAGTCTCGCAAC 934052 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247 ||| ||||||| | |||||||||||| || Sbjct 934053 GAGTACAACCCTCGTGTTTAGTTGCCATCGTT 934084 >seq1364 Length=9730 Score = 105 bits (116), Expect = 2e-20 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223 || || |||||| | | ||||||| || || ||||| ||||||| |||||| ||||||| Sbjct 2228 TGTATAGTTGTCATTATCTCGTGTTGTAAGGTGTTGAGTTAAGTTTCGCAACAAGCGCAA 2287 Query 224 CCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAAC 283 |||| ||| || ||| | || |||| || || | || || || |||| |||| Sbjct 2288 CCCTCGTATTTAATTACCACCGTTGAGTTTGGAACCTTGAGCAGATTGTATGTGATAAAC 2347 Query 284 CGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGT 343 | |||||| || ||| || ||| |||| ||||||||||| | || | |||||| Sbjct 2348 CAAAGGAAGATGAGGATGATCCCAAGTCATTATGCCCCTTATATCCTAGGTGAGACACGT 2407 Query 344 GCTACAATGGACA 356 |||| ||||| || Sbjct 2408 GCTATAATGGCCA 2420 >seq15256 Length=3182 Score = 78.8 bits (86), Expect = 3e-12 Identities = 147/214 (69%), Gaps = 14/214 (7%) Strand=Plus/Minus Query 158 AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA 217 || || |||||| ||||| |||| | | ||| | || | |||| ||||||||||||| | Sbjct 840 AGATGGTGCATGATTGTCATCAGTTTGCGTCATAAGGTATTGGATTAAGTCCCGCAATAA 781 Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAA----GTTGACTGCC 273 | | | ||| | ||||||| || | || |||| | || |||| ||||| Sbjct 780 ACACCATTCTTGTGTTTAGTTGTCACCGTTGAGTTTGTAACCCTAAACGGGTTGA----- 726 Query 274 GGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAAT-CATCATGCCCCTTATGATTTGG 332 ||| || || |||||||| ||| || | || | ||| |||||||| || ||| Sbjct 725 --TGATAAGGCGAAGGAAGGT--GGATGATATGAAGTCCATTTTGCCCCTTGTGTCTTGA 670 Query 333 GCTACACACGTGCTACAATGGACAATACAAAGGG 366 || | |||||||||| | || ||| | |||||| Sbjct 669 GCGAAACACGTGCTATAGTGACCAAGATAAAGGG 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503732829440