Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9231 306 6e-81 seq5242 300 3e-79 seq1727 300 3e-79 seq7581 279 8e-73 seq3516 279 8e-73 seq3765 255 9e-66 seq2594 217 2e-54 seq3494 188 1e-45 seq3366 109 9e-22 >seq9231 Length=1709 Score = 306 bits (338), Expect = 6e-81 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1619 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | ||||||||||||||||||| | Sbjct 1618 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCCGG 1561 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 1560 CCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 1501 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 1441 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 1440 AGAAAGAGCTCTCAATCTGTC 1420 >seq5242 Length=1196 Score = 300 bits (332), Expect = 3e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 636 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 695 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | ||||||||||||||||||| | Sbjct 696 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCCGG 753 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 754 CCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 813 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 873 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 874 AGAAAGAGCTCTCAGTCTGTC 894 >seq1727 Length=11058 Score = 300 bits (332), Expect = 3e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6176 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6235 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | ||||||||||||||||||| | Sbjct 6236 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCCGG 6293 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 6294 CCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 6353 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6354 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 6413 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 6414 AGAAAGAGCTCTCAGTCTGTC 6434 >seq7581 Length=1513 Score = 279 bits (308), Expect = 8e-73 Identities = 220/261 (84%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 559 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCACAACATCTAACGGCATCACAGA 500 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||| || | Sbjct 499 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAACCGG 442 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | | ||||||||||||| ||||| Sbjct 441 CCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCTGAAGTCTCGTTCGTTAACGGAA 382 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 381 TTAACCAGACAAATCGCTCCACCAACTAATAACGGCCATGCACCACCACCCATAGAATCA 322 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 321 AGAAAGAGCTCTCAGTCTGTC 301 >seq3516 Length=6239366 Score = 279 bits (308), Expect = 8e-73 Identities = 220/261 (84%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2422143 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2422084 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 | ||||||||||| |||||||| | | || |||| | |||| || ||||||||||| | Sbjct 2422083 CTTGTTATTGCCTTAAACTTCCTTGGCCT--AAGCGGCCATAGCCCGTCTAAGAAGCCGG 2422026 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| ||||||||||||||| ||||| Sbjct 2422025 CCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCAGAGGTCTCGTTCGTTAACGGAA 2421966 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2421965 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 2421906 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 2421905 AGAAAGAGCTCTCAGTCTGTC 2421885 Score = 244 bits (270), Expect = 2e-62 Identities = 210/259 (81%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||| ||| |||||||||||||||||||||||| ||| Sbjct 2669618 ACTCGTTGAATACATCAGTGTAGCGCATGTGTGGCCCAGAACATCTAAGGGCATCATAGA 2669559 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||||| | | || | | ||| ||||||||| |||||||| Sbjct 2669558 CTTGTTATTGCCTCAAACTTCCTTCGCCTAAGTGGCCATAATCCCTCTAAAAAGCCAGCT 2669499 Query 122 ACCAACCATAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | || | ||| |||||||| | ||||||| ||| ||| ||||| Sbjct 2669498 GCGGAAAGTCACCTCTGCGTAACTAGTTAGCAGGCTGAGGTCTCATTCATTAATAGAATT 2669439 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2669438 AACCAAATAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 2669379 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 2669378 AAAGAGCTCTCAGTCTGTC 2669360 >seq3765 Length=752 Score = 255 bits (282), Expect = 9e-66 Identities = 215/261 (82%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 188 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATATAAGGGCATCACAGA 247 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | ||||||||| ||||||||| | Sbjct 248 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTATAAGAAGCCGG 305 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | | | || ||||| | |||| | || |||||||| Sbjct 306 CCGCGGAGGGTCACCTCCGCGTAGGAAGTTGGCAGGCTGAGGTATAATTTACTATCGGAA 365 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 366 TTAACCAGACAAATCGCTCCACCAAATAAGAACGGCCATGCACCACCACCCATAGAATCA 425 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||| Sbjct 426 AGAAAGAGCTATCAGTCTGTC 446 >seq2594 Length=22807 Score = 217 bits (240), Expect = 2e-54 Identities = 173/205 (84%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAG 115 |||||||||||||||||||||||||| | | || |||| | ||||||||||||||||| Sbjct 12552 CAGACCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAG 12495 Query 116 CCAGCCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 || ||| | | | | | | |||| |||||||| | ||||||||||||||| | Sbjct 12494 CCGGCCGCGGAGGGTCACCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAAC 12435 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 12434 GGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCTATAGA 12375 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| ||| |||||| Sbjct 12374 ATCAAGAAAGAGCTCTCAGTCTGTC 12350 >seq3494 Length=2094846 Score = 188 bits (208), Expect = 1e-45 Identities = 198/260 (76%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||| |||| || |||||| |||||||||| |||||||| | Sbjct 747349 ACTCGTTGAGTACATCAGTGTAGTGCGCATGGGGCCCAAAACATCTAAGAGCATCACAAA 747408 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||| |||||||||||||||||| | | || | | || ||||||||||||| | || Sbjct 747409 CCTATTATTGCCTCAAACTTCCTTGGCCTAAGTGACTGTAATCCCTCTAAGAAGTCGGCT 747468 Query 122 AC---CAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || || | || |||| ||| || | | |||||| ||||||| ||||| Sbjct 747469 ATGGACACCC-----CCATATAGCTAGTTATCAAGCTGAGGTCTTTTTCGTTAATGGAAT 747523 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||| ||||| ||| | |||||||| || ||||||| |||||| Sbjct 747524 TAACCAGACAAATCGCTCCACTAACTATGAATGACCATGCACAACAACCCATACAATCAA 747583 Query 239 GAAAGAGCTATCAATCTGTC 258 |||| | || | | |||||| Sbjct 747584 GAAAAATCTCTTAGTCTGTC 747603 >seq3366 Length=527904 Score = 109 bits (120), Expect = 9e-22 Identities = 175/245 (71%), Gaps = 20/245 (8%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 || || || ||||||||| ||||||||| ||||||||| | ||||| |||||||||||| Sbjct 125105 TATCGTGCATGCGGCCCATTACATCTAAGAGCATCACAGGCTTGTTACTGCCTCAAACTT 125046 Query 82 CCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT-----C 134 | |||| | |||| | ||| || |||| ||||| | || ||| || | Sbjct 125045 TC-TTGG-TCTAAGCAATCATAATCTCTCTTAGAAGTTGG---TCATTCATGGTTACCAC 124991 Query 135 GATGGGGCTATTTAGCAGGTT-AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 |||| |||| |||| ||||| |||| || | |||||||||| |||||| Sbjct 124990 CATGGAGCTAGTTAGTAGGTTCAAGG------GAATTGACAGAATTAACCAAACAAAT-G 124938 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 | || ||||||||| | | ||||||||| | || || ||| |||||||||| | ||| Sbjct 124937 TTTCATTAACTAAGAATGACTATGCACCACTGCTCAAAGGATCTAGAAAGAGCTCTAAAT 124878 Query 254 CTGTC 258 ||||| Sbjct 124877 CTGTC 124873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796662879684