Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3479 178 3e-42 seq3396 131 3e-28 seq1442 131 3e-28 seq3507 102 2e-19 seq3497 96.9 7e-18 seq1837 87.8 4e-15 seq3498 73.4 8e-11 >seq3479 Length=1706892 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 590463 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 590404 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 590403 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 590345 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||| ||||||||||| |||| ||||||| ||| Sbjct 590344 GCTTGACTGCAAGACCCACCCGTCGAGCAGGCACGAAAGTCGGCCTTAGTGATCCGACGG 590285 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 590284 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 590235 >seq3396 Length=760493 Score = 131 bits (144), Expect = 3e-28 Identities = 169/232 (73%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| |||||| ||||||| |||||||||| ||||||||||| Sbjct 601568 GGGACAGTCTCAGGTAAACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 601627 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATG---CGCACAGTGCAAAGGCAAAAGG 227 | ||||| | || | ||| ||| | || | || |||||||||| | || | Sbjct 601628 GTGCAAAGGTTTTCTTGGGCCGGACGGAGAT--TGGCCCTCAAAGTGCAAAGGTAGAAAG 601685 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | || ||||| | || | | ||| ||||||||||||||| || |||| ||||||| | Sbjct 601686 GAGCTTAACTGCAAGACTCACCCGTCGAGCAGGGACGAAAGTGGGCCTTAGTGATCCGAC 601745 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| | ||||| || ||| |||| ||||||||||| ||| || |||||| Sbjct 601746 GGTGTCAAGTGGAAGGGTCGTTGCTCAACGGATAAAAGTTACTCTAGGGATA 601797 >seq1442 Length=9076 Score = 131 bits (144), Expect = 3e-28 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| | ||||| ||||||| |||||||||| |||||||||||| Sbjct 8685 GGACAGTCTCAGGTAGATAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCG 8626 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTG 230 ||||| | ||| || || || | || | | |||||||||||| ||||| Sbjct 8625 TGCAAAGGTTTCCTAAGGCCAGACAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAA 8567 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| | | |||| | ||| |||| ||| |||||||| |||| ||||||| || | Sbjct 8566 CTTGACTACAAGACCCACCTGTCGAGCAAGGATAAAAGTCGGCCTTAGTGATCCGACGAT 8507 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||||| | | |||||| ||||||||||| ||| || |||||| Sbjct 8506 GCTGAGTGGAAGAGTCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 8458 >seq3507 Length=2795260 Score = 102 bits (112), Expect = 2e-19 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| |||||||| | |||| | ||| |||||||| ||||||| Sbjct 1701091 AGTGCAAAGGCAGAAGGGAACTTGACTGCAAGACCCACCTGTCGAGCAGGGAAGAAAGTC 1701032 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || |||| | ||||| |||| ||||||| ||| ||| ||| | ||||||||| ||| Sbjct 1701031 GGCCTTAGTAATCCGATAGTGCCAAATGGAATGGCTGTCACTCAATGGATAAAAGTTAC 1700973 >seq3497 Length=2472235 Score = 96.9 bits (106), Expect = 7e-18 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 || ||| | |||| | | |||||| ||||||| |||||||||| |||||||||| Sbjct 2264792 GGAACAATCTCAGACAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGA 2264733 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGG 228 ||||| | || | | || ||| | || | | | |||||||||||| ||||| Sbjct 2264732 ATGCAAAGGTTTTCTTGGGTCAGACGGAGAT--TGACCCTCGAGTGCAAAGGCAGAAGGG 2264675 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | |||||||| | |||| | || || ||||| |||||||| |||| |||||| | Sbjct 2264674 AGCTTGACTGCAAGACCCACTTGTTGAGTAGGGATGAAAGTCGACCTTAGTGATCCAACA 2264615 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| | || || | ||||||| | |||||||| ||| || |||||| Sbjct 2264614 GTGCCG-GTGAAAGGATCGTCGCTTAATAGATAAAAGTTACTCTAGGGATA 2264565 >seq1837 Length=15861 Score = 87.8 bits (96), Expect = 4e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | || |||||||||||||||| Sbjct 8315 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCCTCGAGCAGGGACGAAAGTC 8256 Query 271 GGGCTTAATGATCCGGCGGTG 291 || |||| ||||||| ||||| Sbjct 8255 GGCCTTAGTGATCCGACGGTG 8235 >seq3498 Length=2744760 Score = 73.4 bits (80), Expect = 8e-11 Identities = 122/171 (71%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| ||| | |||||| || |||| |||||||||| ||||| |||| Sbjct 386759 GGGACAGTCTCAAGTAGACAGTTTTTATGAGGCGTAGGCCTCCCAAAAGGTAACAGAGGT 386700 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| | | | || | | |||| ||||||| ||||| Sbjct 386699 GTGCAAAGGTTTCCTCGGGCCGGACGAAGATTG-GCCCTCGAGTGTAAAGGCAGAAGGGA 386641 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCA-GGGAC-GAAAGTCGGGCTTAA 278 | |||||||| | |||||| |||||||| ||||| |||||| | ||||| Sbjct 386640 GCTTGACTGCAAGACCCTCCCGTCTAGCAGGGGACAAAAAGTCAGCCTTAA 386590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982225486464