Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3135 183 7e-44 seq3475 163 6e-38 seq3507 159 7e-37 seq3480 152 1e-34 seq3462 143 6e-32 seq15599 141 2e-31 seq3430 129 1e-27 seq3252 120 7e-25 seq3487 91.5 3e-16 seq3486 82.4 2e-13 seq3489 80.6 6e-13 seq3465 80.6 6e-13 >seq3135 Length=45773 Score = 183 bits (202), Expect = 7e-44 Identities = 139/163 (85%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||||| || |||| ||||| |||||||| | || |||||||||||| |||| | ||||| Sbjct 26853 CATTG-CTCCATCAAGCTTTTGCCCATTGCCGAAAATTCCCCACTGCGGCCTTCTGTAGG 26795 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||| |||| Sbjct 26794 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGTTACTGATC 26735 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| |||| | || |||| |||||||||||||||||| ||| Sbjct 26734 ATCGTCTTGATAAGGTATTATCTCACCAACTAGCTAATCAGAC 26692 >seq3475 Length=2139848 Score = 163 bits (180), Expect = 6e-38 Identities = 128/151 (85%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| | || ||||||||||| ||||||| ||||||||| || || Sbjct 685468 TCAGGCTTTCGCCCATTG-CAAAAATTCCCCACTGTTGCCTCCTGTAGGAGTCAGGGTCG 685526 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| |||||||||||||||||||| ||| |||| || |||||| Sbjct 685527 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAACTACTGATCATCATCTTGGT 685586 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 | ||| |||||| |||||||||||| || Sbjct 685587 AA--TATTGCCTCACTAACTAGCTAATCAGA 685615 >seq3507 Length=2795260 Score = 159 bits (176), Expect = 7e-37 Identities = 138/170 (81%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || |||||||||||||||||| || ||| | ||||| |||||| Sbjct 369408 CATGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTTCTCACTGATGCCTC 369466 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||||| || ||||||||| || |||| ||||||||||||| |||||| | Sbjct 369467 ATGCAGGAGTCTGGGCCATGTCTCAGTCCCGTTGTGGTTGATCATCCTCTCGGACCAGCT 369526 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||||||| |||||| ||| ||| || ||||||||||||||| ||| Sbjct 369527 ACTGATCGTCGTCTTGGTAAGCTATTGTCTTACCAACTAGCTAATCAGAC 369576 >seq3480 Length=1794408 Score = 152 bits (168), Expect = 1e-34 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 50 GGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 109 |||| | ||||||| || |||||||||||||| ||||||||||||||||| ||| | Sbjct 776118 GGCTCACACCCATTGCGGAAAATTCCCCACTGCTGTCTCCCGTAGGAGTCTGGGTCGTAT 776177 Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 |||||| ||||||| |||||||| ||||| ||||| ||| |||| | ||| |||| || Sbjct 776178 CTCAGTCTCAGTGTGGCTGATCATACTCTCGAACCAGCTACTGATCATTGCCATGGTAAG 776237 Query 170 CCATTACCTCACCAACTAGCTAATCCGAC 198 | ||| ||||||||||||||||||| ||| Sbjct 776238 CTATTGCCTCACCAACTAGCTAATCAGAC 776266 >seq3462 Length=1892704 Score = 143 bits (158), Expect = 6e-32 Identities = 99/112 (88%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||||||||||||||| |||||||||||| | |||||| ||||||||||||| |||||| Sbjct 453571 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGATGATCATCCTCTCGGACCAG 453630 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 453631 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 453682 >seq15599 Length=3399 Score = 141 bits (156), Expect = 2e-31 Identities = 98/110 (89%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 2 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 61 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| |||||||||||||||||| ||| Sbjct 62 ACTGATCATCGCCTTGGTAAGCTATT-GCTCACCAACTAGCTAATCAGAC 110 >seq3430 Length=1054395 Score = 129 bits (142), Expect = 1e-27 Identities = 127/163 (78%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 || |||||| || |||| ||||||| | ||||| || ||| ||| |||||| | || Sbjct 210073 GCAGCATTG-CTCCATCAAGCTTTCGTCTATTGTAGAAAATTTTCCAATGCTGCATTTCG 210015 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 |||||||||| ||| ||| ||| ||||||| ||||||| ||||||||||||||| Sbjct 210014 TAGGAGTCTGAGTCGTATCTTAGTCTCAGTGTGGTTGATCATTCTCTCAGACCAGTTATT 209955 Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||| |||||||||| | ||| |||||||||||| ||||| Sbjct 209954 GATCATCGCCTTGGTAACTTATTGTCTCACCAACTAGTTAATC 209912 >seq3252 Length=95957 Score = 120 bits (132), Expect = 7e-25 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||||| || |||||| || | ||||||||| ||||||| |||||||| || Sbjct 81322 TCAGGCTTTTGCTCATTGTAAAAAAAATTTCACTGCTGCATCCCGTAAGAGTCTGGGTCG 81381 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||| | ||||||| || || ||||||||| ||||| ||| |||| | ||||| Sbjct 81382 TGTCTCAATCTCAGTGTGCCTAATTATCCTCTCAAACCAGCTACTGATCATTATTTTGGT 81441 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||| ||| ||||| |||||||||||| || Sbjct 81442 AAGCTATTGTCTCACTAACTAGCTAATCAGA 81472 >seq3487 Length=2134545 Score = 91.5 bits (100), Expect = 3e-16 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||||| | | ||| || ||| || || |||| | ||| ||||||| | || Sbjct 313209 TCAGGCTTTTGTCTGTTGAAGAAAATTTCCG-CTACTGCACCTCGTTGGAGTCTAGGCCA 313267 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | ||| ||| |||||| |||||||||||||||||| || | |||| ||| |||||| Sbjct 313268 TATCTTAGTCTTAGTGTGGCTGATCATCCTCTCAGACAAGCAATTGATCATCGTCTTGGT 313327 Query 167 GAGCCATTACCTCACCAACTAGCTAAT 193 || ||| |||||||||||| |||| Sbjct 313328 AAGTTATTGCCTCACCAACTACTTAAT 313354 >seq3486 Length=2184632 Score = 82.4 bits (90), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| || ||||| | | | || ||||||| |||| | || ||||||||| | |||||| Sbjct 665911 CACACGATATTGGTTTGTT-AGACTTTCGCACATTATAAAAAATTCCCCACGGTTGCCTC 665969 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| |||| || | | ||| |||| ||| ||||| |||||||| |||| | || Sbjct 665970 CCGTAAGAGTTTGAATCATGTTTCAGCCCCATTGTGA-TGATCATCATCTCGAAGTAG-- 666026 Query 149 ACGGATCGTCGCCTTGGT 166 | |||| |||||||||| Sbjct 666027 CCTGATCATCGCCTTGGT 666044 >seq3489 Length=2417058 Score = 80.6 bits (88), Expect = 6e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCT 111 |||||| ||||||||||| | ||| ||| ||| |||| || ||| ||| ||||||| Sbjct 467959 CTTTCGACCATTGTCCAAGAACCCCTACTTCTGTCTCCGGTGTGAGATTGGGTCGTGTCT 467900 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACCA 145 |||||||||||| ||| |||||| | |||||| Sbjct 467899 CAGTTCCAGTGTAACTAATCATCGGCAAAGACCA 467866 >seq3465 Length=1542156 Score = 80.6 bits (88), Expect = 6e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 46 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 |||| |||| ||| ||| || |||| ||| || |||||| |||| |||| ||| | Sbjct 1231980 ATCAAACTTTTGCCAATTACAAAAAATTCTCCATTGTTGCCTCTCGTATGAGTTTGGGTC 1231921 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 | ||||||| | ||||||||||||||||||||| |||| ||| Sbjct 1231920 ATATCTCAGTACTAGTGTGACTGATCATCCTCTCGAACCAATTA 1231877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071809569920