Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq8269 143 1e-31 seq2719 138 4e-30 seq12082 136 1e-29 seq3324 136 1e-29 seq3479 123 9e-26 seq3505 120 1e-24 seq3391 111 6e-22 seq3506 96.9 1e-17 seq11227 91.5 5e-16 seq3389 89.7 2e-15 seq3513 86.0 2e-14 seq3514 84.2 8e-14 >seq8269 Length=1593 Score = 143 bits (158), Expect = 1e-31 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1389 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1448 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1449 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1508 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||| |||||| |||| |||||||||||||| | |||||||| Sbjct 1509 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 1557 >seq2719 Length=23099 Score = 138 bits (152), Expect = 4e-30 Identities = 301/444 (68%), Gaps = 25/444 (6%) Strand=Plus/Plus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 |||| || ||||||||||| | | | |||| | |||| ||||||||||| ||||| || Sbjct 14910 ATTTTAGGAAGAACCAGCTAACTCTATGTTTAAGTGGCATTTCACCCCTAACCACAATTC 14969 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 ||| | | | |||||| | ||| ||| | |||||| | | |||| |||||| Sbjct 14970 ATCTGCCGATTCTTCAACATCAGTTAATTCAGACCTCCATTTAATTTCACCCAAGCTTCA 15029 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCCT 329 ||| ||||||||||||| || | ||| |||| | | | ||| | | ||||| Sbjct 15030 TCCTAGACATGGATAGATCAATTAGGTTCAGGTCCATAAACAGTGAAAGTT----GCCCT 15085 Query 330 ATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACG--CA 387 || ||||| ||||| ||| || | | | ||||| | | | | | || | Sbjct 15086 ATGAAGACTCACTTTCACTA----TAACTCCGATTGGTTACCTTAACCAAGCCACTGCCT 15141 Query 388 A--ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC 445 | | || | |||||||||||| ||||||| |||| | ||| ||| | Sbjct 15142 ATGAGTCATTGACTCATTCTTCAACAGGCACGTAGTCA---GAGCCCTG---GGCTC--- 15192 Query 446 AGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTAC 505 |||| || | || || ||||||||| || ||||||||||||| | | ||| | Sbjct 15193 --CTCCCACTGCTTAGGAGCTTATGGTTTCATGTTCTATTTCACTCCCTGATGGAGGTTC 15250 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||| |||| | ||||||||||| | |||||||||||| ||| Sbjct 15251 TTTTCACCTTTCCCTCACGATACTACTTTGCTATCGGTCAACCAGGAGTATTTAGCCTTG 15310 Query 566 ACGGGTGGTCCCGCCAGATTCACA 589 ||| |||| | |||||||| Sbjct 15311 TAAGGTTGTCCTTGCTGATTCACA 15334 >seq12082 Length=2169 Score = 136 bits (150), Expect = 1e-29 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||| Sbjct 1749 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCA 1690 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||| ||||| || | | |||||| | ||| ||||||| ||||||| | Sbjct 1689 CCCCTAAACACAACTCATCTGCTGATTCTTCAACATCAGTTGGTTCGGACCTCCACTTAG 1630 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | |||| |||||| |||| |||||||||||||| | |||||||| Sbjct 1629 TTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 1580 >seq3324 Length=362348 Score = 136 bits (150), Expect = 1e-29 Identities = 286/420 (68%), Gaps = 30/420 (7%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT-TTTCAACCTAAGTGG 237 |||||| |||| ||| ||||| |||||| |||||| | | | ||||||| | || | Sbjct 120964 GTTTGAGTGGCATTTTGTCCCTAACCACAGCTCATCCTTTTATTCTTTCAACTTCTGTTG 121023 Query 238 GTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGC 297 ||||| ||||||| | | |||| ||||| ||| |||||||||||||| | | Sbjct 121024 GTTCGAACCTCCACTTAGATTCACCCAAACTTCATACTGTTCATGGATAGATCACCTAGG 121083 Query 298 TTCGGGTCTTGA--TCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 || ||||| | | ||| || | || |||| |||||||||||||||| ||| Sbjct 121084 TTTGGGTCCATAAGTAGTGACAATT----GCGCTATGAAGACTCGCTTTCGCTACAACTA 121139 Query 356 CCCCACACGGGTT-----AACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAA 409 ||||| |||| || ||| || | | || | || ||||||||||| Sbjct 121140 TGGT----GGGTTCCCTTAACCAAGC--CACGACCTATGAGTCACCGGTTCATTCTTCAA 121193 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 |||||||| |||| | ||| ||| | |||| || | ||| | | || Sbjct 121194 CAGGCACGCGGTCA----GAGCCTTG--GGCTC-----CTCCAACTGCTTGGAAGGTTAT 121242 Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||| |||||| || | | ||| ||||||| | || |||||||||||| Sbjct 121243 GGTTTCATGTTCTACTTCACTTCCTGATGGAGGTTCTTTTCATCCTTTCCTCACGGTACT 121302 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | |||||||||||||| | |||||||| |||| |||||| | | |||||||| Sbjct 121303 TCTTCGCTATCGGTCACCCATGAGTATTTCCCCTTACAAGGTGGTTCTTGCTGATTCACA 121362 Score = 127 bits (140), Expect = 7e-27 Identities = 284/420 (68%), Gaps = 26/420 (6%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT-TTTCAACCTAAGTGG 237 |||||| |||| ||| ||||| |||||| |||||| || | | ||||||| | || | Sbjct 120435 GTTTGAGTGGCATTTTGTCCCTAACCACAGCTCATCCTCTTATTCTTTCAACTTCTGTTG 120494 Query 238 GTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGC 297 ||||| ||||||| | | |||| ||||| ||| |||||||||||||| | | Sbjct 120495 GTTCGAACCTCCACTTAGATTCACCCAAACTTCATACTGTTCATGGATAGATCACCTAGG 120554 Query 298 TTCGGGTCTTGA--TCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 || ||||| | | ||| || | || |||| ||||| |||||||||| ||| Sbjct 120555 TTTGGGTCCATAAGTAGTGACAATT----GCGCTATGAAGACTCACTTTCGCTACAACTA 120610 Query 356 CCCCACACGGGTTAACCTCGCGACACAACG--CAA--ACTCGCAGGCTCATTCTTCAAAA 411 ||||| | | | | | ||| | | | || | || ||||||||||| | Sbjct 120611 TGGT----GGGTTCCCTTAACCAAGCCACGGCCTATGAGTCACCGGTTCATTCTTCAACA 120666 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 |||||| |||| | ||| ||| | |||| | | ||| | | |||| Sbjct 120667 AGCACGCGGTCA----GAGCCTTG--GGCTC-----CTCCAATTGCTTGGAAGGTTATGG 120715 Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| || ||| |||||| || | | ||| |||||||| || ||||||||||||| Sbjct 120716 TTTCATGTTCTACTTCACTTCCTGATGGAGGTTTTTTTCACCCTTTCCTCACGGTACTTC 120775 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 | |||||||||||||| | |||||||| |||| |||||| | | |||||||||| Sbjct 120776 TTCGCTATCGGTCACCCATGAGTATTTCCCCTTACAAGGTGGTTCTTGCTGATTCACACG 120835 >seq3479 Length=1706892 Score = 123 bits (136), Expect = 9e-26 Identities = 131/170 (77%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || |||||||||| ||||||||||| | | ||| || |||| || || Sbjct 97965 GCTGCACCTCAACGCATTTCGGG-AGAACCAGCTAGCTCTGTGTTCGAGTGGCATTG-AC 98022 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 98023 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 98082 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 | |||| ||||| |||| |||||||||||||| | ||||||||| Sbjct 98083 TTCACCCAAACTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCT 98132 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/107 (77%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||||| ||| || |||||||||| || | ||| | |||| ||| ||| ||||| ||| Sbjct 47735 ATGGTGTCATGTTCTATTTCACTGCCTGATGGGGTT--TTTTTACCCTTCTCTCACTGTA 47678 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGT 574 || | |||||||| |||| ||||||||||||| ||| |||||| Sbjct 47677 CTACTTCGCTATCGATCACTAAGGAGTATTTAGTTTTACAAGGTGGT 47631 >seq3505 Length=2969368 Score = 120 bits (132), Expect = 1e-24 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| ||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 2571977 GGGCCACCCTAATCCATTAAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 2571918 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| || |||||||||| | | ||| || |||||||||||||| |||| Sbjct 2571917 AATAGATTTCGCAGAAAACCAGCTATATCCGATCTTGGTTAGCCTTTCACCCCTAGCCAC 2571858 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | |||||||| | ||| | || || ||||||||||||||||| | | | | | | Sbjct 2571857 AAATCATCCCCATATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCTTGTAAGAGCTC 2571798 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 2571797 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 2571758 >seq3391 Length=949803 Score = 111 bits (122), Expect = 6e-22 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| | | ||||||||||||| ||||| ||||||||| |||||||||||||| Sbjct 882270 GGTTTCATGG-CAATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTAC- 882213 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | |||||||||||||| |||||||||||| ||| |||||||| |||||||| Sbjct 882212 TCTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGATGATTCACA 882153 Query 590 CGAAATTTCA 599 || ||| || Sbjct 882152 CGGGATTACA 882143 >seq3506 Length=3249968 Score = 96.9 bits (106), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198 ||||||| || |||||| |||||||| ||||| | | ||| | |||| ||||||| Sbjct 2015947 TGCACCTCAACGCATTTTAGGGAGAACTAGCTAGCTCTGGGTTCAAGTGGCATTTCACCT 2016006 Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCT 258 | | ||||| |||||| | | | |||||||| ||| || || |||||| || | Sbjct 2016007 CCAGCCACAACTCATCCGTTGATTCTTCAACCTTAGTCAATTTGGATCTCCACTTAGTTT 2016066 Query 259 TACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCC 316 |||| | |||| |||| |||||||||||||| ||||||| | | | | ||| | Sbjct 2016067 CACCCAAGTTTCATCCTGGTCATGGATAGATCACCCAAGTTCGGGTCCATAAGCAGTGAC 2016126 Query 317 ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 | | ||| ||| |||||||||| ||||||||| Sbjct 2016127 AAT----TGCCGTATGAAGACTCGCTTTTGCTACGGCT 2016160 >seq11227 Length=1999 Score = 91.5 bits (100), Expect = 5e-16 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| ||| || ||||| ||||||||||||||| | | ||| | |||| ||||||| Sbjct 1722 CTGCGCCTCAACGCATTCTGGGGAGAACCAGCTAGCTCTGGGTTCTAGTGGCATTTCACC 1663 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 | || || || ||||| | | | |||||| | ||| ||||| | |||||| || Sbjct 1662 CTTAACCTCAACTCATCTGTTGATTCTTCAACATCAGTCGGTTCAGAGCTCCACTTAGTT 1603 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||| |||||| | || |||||||| ||||| | |||||||| Sbjct 1602 TCACCCAAGCTTCATCTTGGTCATGGATAAATCACCCAGGTTCGGGTC 1555 >seq3389 Length=699234 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 || |||||| | ||||||||||| || || || ||||||||| ||||||||| ||| Sbjct 16641 ATAGTTTCATATTCTATTTCACTCTCCAATGGGAGTTCTTTTCACCATTCCCTCACAGTA 16700 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || | ||||||||||||| || |||||||| |||| | |||||| | |||||| Sbjct 16701 CTACTTTGCTATCGGTCACCCAGAAGTATTTAACCTTACAAGATGGTCCTTACTGATTCA 16760 Query 588 CA 589 || Sbjct 16761 CA 16762 >seq3513 Length=3706331 Score = 86.0 bits (94), Expect = 2e-14 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||||||||| |||| | ||| ||||| ||| ||| ||||||||||| Sbjct 1200948 GGTTTCATGTTTTATTTCACTTCCCGATGGAGGTTCTTTTTACCCTTCTCTCACGGTACT 1200889 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | ||||||| ||||| | ||||||||| |||| ||| |||| | ||||||| Sbjct 1200888 ACTTCGCTATCAATCACCCATGAGTATTTAACCTTACAAGGTTGTCCTTGCTAATTCACA 1200829 Query 590 CGAAATTTCA 599 | |||| || Sbjct 1200828 TGGAATTCCA 1200819 >seq3514 Length=4646585 Score = 84.2 bits (92), Expect = 8e-14 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 |||||||| | |||||||||||||| | || ||||||||| ||||||||| |||| Sbjct 3667061 TGGTTTCATATTCTATTTCACTCCCCAGTGGATGTTCTTTTCACCATTCCCTCACAGTAC 3667120 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | | || ||| |||| | | |||||||||| ||| || |||| ||||||| Sbjct 3667121 TATTTCGTTATTAGTCATCTATGAGTATTTAGACTTTCAAAGTAGTCCATATTGATTCAC 3667180 Query 589 ACGAAATTTCA 599 ||| ||||||| Sbjct 3667181 ACGGAATTTCA 3667191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817277121536