Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2719 122 2e-25 seq3391 116 9e-24 seq3389 93.3 1e-16 seq3513 87.8 4e-15 seq3324 87.8 4e-15 seq3479 82.4 2e-13 seq8269 75.2 3e-11 >seq2719 Length=23099 Score = 122 bits (134), Expect = 2e-25 Identities = 147/198 (74%), Gaps = 14/198 (7%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAA 244 ||||||| || |||| |||| |||| | ||| ||| ||| ||||| ||| Sbjct 15132 GCCACTGCCTATGAGTCATTGACTCATTCTTCAACAGGCACGTAGTCAGAGCCC------ 15185 Query 245 GTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 |||||||| |||||||| || || ||||||| | |||||||||||||| | Sbjct 15186 -TGGGCTCCTCCCACTGCTTAGGAGCTTATGGTTTCATGTTCTATTTCACTCCCTGATG- 15243 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 | |||||||||| ||||||||||||| ||||| || |||||||||| ||| ||||||| Sbjct 15244 GAGGTTCTTTTCACCTTTCCCTCACGATACTACTTTGCTATCGGTCAACCAGGAGTATTT 15303 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | | |||| Sbjct 15304 AGCCTTGTAAGGTTGTCC 15321 >seq3391 Length=949803 Score = 116 bits (128), Expect = 9e-24 Identities = 106/130 (82%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || | |||||||| | | |||||||||||| | |||||||| Sbjct 882292 CTCCCACTGCTTGGGAGCTTTCGGTTTCATGG-CAATTTCACTCCCCGATG-GGGGTTCT 882235 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||||||||||||||| ||| |||||||||| ||| |||||||||||||| Sbjct 882234 TTTCACCCTTCCCTCACGGTACTC-TTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGC 882176 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 882175 AAGGTGGTCC 882166 >seq3389 Length=699234 Score = 93.3 bits (102), Expect = 1e-16 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 |||||| |||||||||||| || | || ||||||||| || ||||||||| ||||| Sbjct 16644 GTTTCATATTCTATTTCACTCTCCAAT-GGGAGTTCTTTTCACCATTCCCTCACAGTACT 16702 Query 333 AGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGA 392 | || |||||||||| ||| |||||||| |||| | |||||||| | ||||| | Sbjct 16703 ACTTTGCTATCGGTCACCCAGAAGTATTTAACCTTACAAGATGGTCCTTACTGATTCACA 16762 Query 393 CAAAGTTTCTCGTGCTCCGTCCTACT 418 || || | ||||| | | ||||| Sbjct 16763 TAAGATTCCACGTGCCTCATGCTACT 16788 >seq3513 Length=3706331 Score = 87.8 bits (96), Expect = 4e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | |||||||||| | | ||||||||| ||| | | |||||| Sbjct 1200970 CTCCCACTGCTTGGGAGTTTACGGTTTCATGTTTTATTTCACTTCCCGATG-GAGGTTCT 1200912 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 ||| || ||| |||||||||||| ||| ||||| ||| || |||||||| |||| Sbjct 1200911 TTTTACCCTTCTCTCACGGTACTACTTCGCTATCAATCACCCATGAGTATTTAACCTT 1200854 >seq3324 Length=362348 Score = 87.8 bits (96), Expect = 4e-15 Identities = 248/364 (68%), Gaps = 19/364 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | | | ||||||| || |||||| |||||| |||| | | Sbjct 120988 CCACAGCTCAT-CCTTTTATTCTTTCAACTTCTGTTGGTTCGAACCTCCACTTAG-ATTC 121045 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || ||| ||| ||||||||| || | ||| ||||| || || Sbjct 121046 ACCCAAACTT-CATACTGTTCAT-GGATAGATCACCTAGGTTT-GGGTCCATAAGT-AGT 121101 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | || ||| |||||||||||| |||||| || | ||| |||| | Sbjct 121102 GACAATT-GCGCTATGAAGACTCGCTTT-CGCTACAACTATGGTGGGTTCCCTTAACCAA 121159 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||| || |||| | | |||| | ||| ||| |||| |||| | | | Sbjct 121160 -GCCACGACCTATGAGTCACCGGTTCATTCTTCAACAGGCACGCGGTCAG--AGCCT--T 121214 Query 247 GGGCTCCC---ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 ||||||| |||||||| | | || ||||||| | |||| |||||| || | | Sbjct 121215 GGGCTCCTCCAACTGCTTGGAAGGTTATGGTTTCATGTTCTACTTCACTTCCTGATG-GA 121273 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| | || |||||||||||| ||| |||||||||| || ||||||| Sbjct 121274 GGTTCTTTTCATCCTTTCCTCACGGTACTTCTTCGCTATCGGTCACCCATGAGTATTTCC 121333 Query 364 CCTT 367 |||| Sbjct 121334 CCTT 121337 Score = 84.2 bits (92), Expect = 5e-14 Identities = 247/364 (68%), Gaps = 19/364 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || || | | ||||||| || |||||| |||||| |||| | | Sbjct 120459 CCACAGCTCAT-CCTCTTATTCTTTCAACTTCTGTTGGTTCGAACCTCCACTTAG-ATTC 120516 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || ||| ||| ||||||||| || | ||| ||||| || || Sbjct 120517 ACCCAAACTT-CATACTGTTCAT-GGATAGATCACCTAGGTTT-GGGTCCATAAGT-AGT 120572 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | || ||| ||||||| |||| |||||| || | ||| |||| | Sbjct 120573 GACAATT-GCGCTATGAAGACTCACTTT-CGCTACAACTATGGTGGGTTCCCTTAACCAA 120630 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||| | || |||| | | |||| | ||| | | |||| |||| | | | Sbjct 120631 -GCCACGGCCTATGAGTCACCGGTTCATTCTTCAACAAGCACGCGGTCAG--AGCCT--T 120685 Query 247 GGGCTCCCAC---TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 ||||||| | |||||| | | || ||||||| | |||| |||||| || | | Sbjct 120686 GGGCTCCTCCAATTGCTTGGAAGGTTATGGTTTCATGTTCTACTTCACTTCCTGATG-GA 120744 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||| ||||| || || |||||||||||| ||| |||||||||| || ||||||| Sbjct 120745 GGTTTTTTTCACCCTTTCCTCACGGTACTTCTTCGCTATCGGTCACCCATGAGTATTTCC 120804 Query 364 CCTT 367 |||| Sbjct 120805 CCTT 120808 >seq3479 Length=1706892 Score = 82.4 bits (90), Expect = 2e-13 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || ||| ||| | ||||||||||| || | |||||| | Sbjct 47755 CTCCCACTGCTTGGGAGCTTATGGTGTCATGTTCTATTTCACTGCCTGAT--GGGGTT-T 47699 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| || ||| ||||| |||||| ||| |||||| ||| | || ||||||||| Sbjct 47698 TTTTACCCTTCTCTCACTGTACTACTTCGCTATCGATCACTAAGGAGTATTTAG 47645 >seq8269 Length=1593 Score = 75.2 bits (82), Expect = 3e-11 Identities = 111/147 (76%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1455 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 1511 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 1512 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 1567 Query 129 GACTAGACGCCCTAGTAAGACTCGCTT 155 ||| | |||||| ||||||||||| Sbjct 1568 GAC-AATTGCCCTATGAAGACTCGCTT 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241379442176