Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq7581 80.6 2e-13 seq15742 75.2 7e-12 seq3516 75.2 7e-12 seq1727 75.2 7e-12 seq5242 71.6 8e-11 >seq7581 Length=1513 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 731 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 674 Query 122 GCT 124 ||| Sbjct 673 GCT 671 >seq15742 Length=592 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 429 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 486 Query 122 GCT 124 ||| Sbjct 487 GCT 489 >seq3516 Length=6239366 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||| ||||||||||| | |||||||| Sbjct 2422315 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGAGCAGGGACGTAGT-CAACGCAA 2422258 Query 122 GCT 124 ||| Sbjct 2422257 GCT 2422255 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 ||||||| | |||||| ||||| ||| ||||| | ||||||||||| |||||||||| Sbjct 2669812 TCCGAAAACT-TCACTAGACCATTCAATT-GGTAGGA-GCGACGGGCGGTGTGTACAAAG 2669756 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 | |||||||||| | |||||| |||| Sbjct 2669755 GACAGGGACGTAGT-CAACGCGAGCT 2669731 >seq1727 Length=11058 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 6004 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 6061 Query 122 GCT 124 ||| Sbjct 6062 GCT 6064 >seq5242 Length=1196 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||| |||| |||||||||||||||||||||| | |||||| | Sbjct 464 TTCAATCGGTAGGA-GCGACGAGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 521 Query 122 GCT 124 ||| Sbjct 522 GCT 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300749905520