Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3135 165 2e-38 seq3462 158 2e-36 seq3507 152 1e-34 seq15599 143 5e-32 seq3480 140 6e-31 seq3475 132 1e-28 seq3430 104 5e-20 seq3487 80.6 5e-13 seq1007 73.4 8e-11 >seq3135 Length=45773 Score = 165 bits (182), Expect = 2e-38 Identities = 138/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||| | ||| ||||||| || || ||||||||| |||| | |||||||||| Sbjct 26849 GCTCCATCAAGCTTTTGCCCATTGCCGAAAATTCCCCACTGCGGCCTTCTGTAGGAGTCT 26790 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| |||||||| || | ||| |||| ||| Sbjct 26789 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGTTACTGATCATCGT 26730 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||| | | ||||||||||||||||| |||||| | |||||| || || Sbjct 26729 CTTGATAAGGTATTATCTCACCAACTAGCTAATCAGACGCGAGTCCCTC 26681 >seq3462 Length=1892704 Score = 158 bits (174), Expect = 2e-36 Identities = 188/253 (74%), Gaps = 18/253 (7%) Strand=Plus/Plus Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112 ||||||||||||||||||||||||||||||| | ||||| | ||| |||||| | || | Sbjct 453571 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGATGATCATCCTCTCGGACCAG 453630 Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 |||| |||| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| Sbjct 453631 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 453690 Query 173 ATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTA 231 || | ||| ||| || || | | ||||| | | || | |||| Sbjct 453691 CTCCTCGAGCAGATTCCTCCTT--TTA------------CTCCTCAGCC--TACGGGGTA 453734 Query 232 TTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291 ||||| |||||||| ||| |||| ||| || |||||||| || ||| |||||||| Sbjct 453735 TTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCA 453793 Query 292 CCCGTCCGCCACT 304 ||| ||||||||| Sbjct 453794 CCCATCCGCCACT 453806 >seq3507 Length=2795260 Score = 152 bits (168), Expect = 1e-34 Identities = 137/172 (80%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || | ||||| |||||| | || Sbjct 369413 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTTCTCACTGATGCCTCATGCAG 369472 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||| |||||||||||| ||||| | ||| |||||| | || ||||| ||| Sbjct 369473 GAGTCTGGGCCATGTCTCAGTCCCGTTGTGGTTGATCATCCTCTCGGACCAGCTACTGAT 369532 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 ||||| |||||| |||||| ||| |||||||| |||||| | ||||||||| Sbjct 369533 CGTCGTCTTGGTAAGCTATTGTCTTACCAACTAGCTAATCAGACGCGAGCCC 369584 >seq15599 Length=3399 Score = 143 bits (158), Expect = 5e-32 Identities = 184/251 (73%), Gaps = 21/251 (8%) Strand=Plus/Plus Query 55 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCT 114 ||||||||||||||||||||||||||||||| |||||| | ||| |||||| | || ||| Sbjct 2 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 61 Query 115 ACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCAT 174 || |||| ||| |||||| |||||| ||||||||||| |||||| | ||||| ||| | Sbjct 62 ACTGATCATCGCCTTGGTAAGCTATT-GCTCACCAACTAGCTAATCAGACGCGAACCCCT 120 Query 175 CTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATT 233 | | || ||| || || ||| ||||| | || |||||| Sbjct 121 CCTCGGGCAGATTCCTCCTT-------------TGC--TCCTCAG---CTACAGGGTATT 162 Query 234 AGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACC 293 || | |||||| |||||||| ||| || |||||||| || ||| |||||||||| Sbjct 163 AGAAGCCATTTCCAGCTGTTATTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACC 221 Query 294 CGTCCGCCACT 304 ||||| ||||| Sbjct 222 CGTCCACCACT 232 >seq3480 Length=1794408 Score = 140 bits (154), Expect = 6e-31 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 ||||||| | || || ||||||||||| |||||||||||||||||| ||| |||||||| Sbjct 776126 CCCATTGCGGAAAATTCCCCACTGCTGTCTCCCGTAGGAGTCTGGGTCGTATCTCAGTCT 776185 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||||| | ||| ||||| || ||||| |||| | | | |||| |||||| | Sbjct 776186 CAGTGTGGCTGATCATACTCTCGAACCAGCTACTGATCATTGCCATGGTAAGCTATTGCC 776245 Query 144 TCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||||||| |||||| | ||||||||| || Sbjct 776246 TCACCAACTAGCTAATCAGACGCGAGCCCCTC 776277 >seq3475 Length=2139848 Score = 132 bits (146), Expect = 1e-28 Identities = 132/169 (78%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| || || |||||||| ||||||| ||||||||| Sbjct 685462 GCTTCGTCAGGCTTTCGCCCATTGCAAAA-ATTCCCCACTGTTGCCTCCTGTAGGAGTCA 685520 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| ||||||||||||||| |||||| | ||| |||||||| || |||| |||| || Sbjct 685521 GGGTCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAACTACTGATCATCAT 685580 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| |||| ||||| ||||| |||||| | | |||||| || Sbjct 685581 CTTGGT--AATATTGCCTCACTAACTAGCTAATCAGATGTGAGCCCCTC 685627 >seq3430 Length=1054395 Score = 104 bits (114), Expect = 5e-20 Identities = 205/299 (69%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||| | |||| | ||||| || || ||| |||||| | ||||||||||| Sbjct 210065 GCTCCATCAAGCTTTCGTCTATTGTAGAAAATTTTCCAATGCTGCATTTCGTAGGAGTCT 210006 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 | | ||| ||| |||| || ||||| | ||| ||||||| || | || |||| ||| Sbjct 210005 GAGTCGTATCTTAGTCTCAGTGTGGTTGATCATTCTCTCAGACCAGTTATTGATCATCGC 209946 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| |||| |||||||||||| ||||| | ||| |||| | ||||| | | Sbjct 209945 CTTGGTAACTTATTGTCTCACCAACTAGTTAATCAGTCGCAAGCCTCT-TTTCA--AACA 209889 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246 ||| | | | ||| ||||| | | ||| | ||||||| |||||||| Sbjct 209888 AATTTCT--------CCTTTTGC--TCCTCAGTC--TATCGGATATTAGCAGTCGTTTCC 209841 Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 || |||||| || || | || ||| || | ||||||||||| | ||| ||||| Sbjct 209840 AATTGTTATTTTCTTCCCAATGACAAGTT-CTTATGTGTTACTCACTCATCCATCACTA 209783 >seq3487 Length=2134545 Score = 80.6 bits (88), Expect = 5e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 || || |||| | ||| ||||||| |||| | ||| |||| | |||||| | ||| || Sbjct 313237 CCGCTACTGCACCTCGTTGGAGTCTAGGCCATATCTTAGTCTTAGTGTGGCTGATCATCC 313296 Query 102 TCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCG 161 |||||| | || | |||| ||| |||||| | |||| |||||||||||| |||| Sbjct 313297 TCTCAGACAAGCAATTGATCATCGTCTTGGTAAGTTATTGCCTCACCAACTACTTAATTA 313356 Query 162 GCCGCGAGCCCATC 175 | || || ||| || Sbjct 313357 GACGTGAACCCCTC 313370 >seq1007 Length=8384 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 8348 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 8290 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 8289 CTCACCCGTCCGCCACT 8273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998222644224