Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8269 232 2e-58 seq1822 122 2e-25 seq3389 109 1e-21 seq3506 107 5e-21 seq2719 93.3 1e-16 seq12082 78.8 2e-12 >seq8269 Length=1593 Score = 232 bits (256), Expect = 2e-58 Identities = 303/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 839 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 898 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 899 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 958 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 959 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTCCCC-CTAAGGC 1014 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 1015 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1070 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 1071 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1129 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 1130 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 1189 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1190 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1238 >seq1822 Length=15463 Score = 122 bits (134), Expect = 2e-25 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || |||||||||||||| ||||||| |||| ||| |||||| | ||||||||| Sbjct 802 CTCGATCAGTGAGCTATTACACACTCTTGTAAGGGTGGTTGCTTCTTGACAAACCTCCTG 861 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 ||||||| ||| | || |||||| |||||| | || |||||| ||||| ||| | Sbjct 862 GTTGTCTCTGCACCCATACTTCCTTTATAACTGAGCAATCATTTAGGGACCTTAACTGGT 921 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||| ||||||||||| Sbjct 922 GATCTGGGCTATTTCCCTCTCG 943 >seq3389 Length=699234 Score = 109 bits (120), Expect = 1e-21 Identities = 143/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| |||| || ||| |||| ||||| | ||| |||| | | | || || || Sbjct 15980 CCACAACTTCAGCAGATCGCTTA-GCCCCATT-CATCTTCGGTGTAAGAGCGCTCGATCA 16037 Query 267 GTGAGCTATTACGCACTC-TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||| |||||| |||||||| || || |||| | || ||||||||| |||||| Sbjct 16038 GTGAGCTATTATGCACTCTTTTCAAGGGTGACTACTTCTAGGCAAACCTCCTGATTGTCT 16097 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 | || | | || || ||| || |||| || ||| ||| |||||||| ||||| | Sbjct 16098 ATACACCACTACCTCATTTATCATTGAGCGGTCATTTAAGGGTCTTAGCTGGTGATCCAG 16157 Query 386 GCTGTTTCCCTCTC 399 | ||||| |||||| Sbjct 16158 GTTGTTTTCCTCTC 16171 >seq3506 Length=3249968 Score = 107 bits (118), Expect = 5e-21 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||||||| | ||| |||| | ||| | ||| ||||||| | | || || || Sbjct 2015603 CCACAGCTTCAGTAGATCGCTTA-GTTCCGTT-CATCTTCGGCGCAAGAGCGCTAGATCA 2015660 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||| || |||| | ||||||||||| |||||||||| | || ||||| |||||||||| Sbjct 2015661 GTGAACTGTTACACGCTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTACTGGTTGTCTT 2015720 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | | || ||| ||| ||| || ||||| |||||| || ||||| ||| Sbjct 2015721 TGCACCCCTATTTCTTTTATCACCGAGCAGTCATTTAGGAGCCTTATTTGGTGATCCGGG 2015780 Query 387 CTGTTTCCCTCTC 399 ||||| ||||| Sbjct 2015781 TTGTTTTTCTCTC 2015793 >seq2719 Length=23099 Score = 93.3 bits (102), Expect = 1e-16 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 || ||||||| ||| |||| |||||||| |||||||||| | | || ||||| |||| Sbjct 14610 CAATGAGCTACTACACACTGTTTCAAGGGTGGCTGCTTCTAGGTAAATATCCTGACTGTC 14669 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | ||| | | || |||||| || |||| || | |||||||||||||| ||||| Sbjct 14670 TCTGCATCCCTACCTCCTTTATCATTGAGCGGTCATTCAGGGGCCTTAGCTGGTGATCAC 14729 Query 385 GGCTGTTTCCCTCT 398 || ||||||| ||| Sbjct 14730 GGTTGTTTCCTTCT 14743 >seq12082 Length=2169 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 || ||||| ||| | | || |||||| ||||||| || |||||||||||||||| Sbjct 1981 GGCTGTCTCTGCACCCCTACTTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGG 1922 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||||||||||||||||| Sbjct 1921 TGATCCGGGCTGTTTCCCTCTCG 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177390811136