Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3412 93.3 7e-17 seq3135 77.0 5e-12 >seq3412 Length=755790 Score = 93.3 bits (102), Expect = 7e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| || |||||| | Sbjct 407485 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCCCTGTATTATC 407544 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||| | ||||||| ||||||||| Sbjct 407545 GCGGCTGCTGGCACAGAATTAGCCGATGCTTATTCC 407580 >seq3135 Length=45773 Score = 77.0 bits (84), Expect = 5e-12 Identities = 184/277 (66%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 7 CTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCC 66 |||||| ||||| |||||| | ||| || || |||||| |||||||| | | Sbjct 27199 CTTTCGTCTCTCAGTGTCAGTATTAGCCCAACAGAATGCTTTCGCCGTTGGTGTTCTTTC 27140 Query 67 GTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGA 126 || | |||| ||||| ||||| || | |||||| || || || | | |||| || Sbjct 27139 CGATCTTTACGTATTTCGCCGCTCCATTTGAAATTCCT-TTACCCCTACTGTACTCCAGC 27081 Query 127 AAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTT 186 |||||| | || | || |||||| || | | || | || || Sbjct 27080 TTGGTAGTTTCCACTGTTTGTCCAGGATTGAGCTATGAGATGTGACGACGGAATTAAAAA 27021 Query 187 CCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTAC 246 || |||||| ||||||| ||||| | |||| |||||| ||| ||| |||||| Sbjct 27020 GCCACCTACAGATGCTTTACATCCAATCATTCCGAATAACGTTTGTATCCTCTGTATTAT 26961 Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||||| ||||||| | | ||||||| Sbjct 26960 CGCGGCTGCTGGCACAGAGTTAGCTGATGGTTATTCC 26924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828657372844