Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3396 203 5e-50 seq3389 178 2e-42 seq1442 174 2e-41 seq3309 131 3e-28 seq3454 95.1 2e-17 seq3507 93.3 7e-17 seq3402 91.5 2e-16 >seq3396 Length=760493 Score = 203 bits (224), Expect = 5e-50 Identities = 209/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||| | |||||| |||||| || | ||| ||| |||||| Sbjct 602119 GGTGGGCTTACTACTTAGATTCTTTCAGCAGTTATCCACTCGCA-CTTGGCTACCCAGCG 602061 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | |||| || ||| |||||| ||||| |||||||||||| ||| | Sbjct 602060 TTTACCGTTGGCACGATAACTAGTACACTAGAGGTGTGTCCTTCCCGGTCCTCTTGTATT 602001 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| | ||||||||| || || ||||| ||||||| ||| |||||| |||| | Sbjct 602000 AGGGAAAAGTCCTCTCAATGCTCTAACACCCACAACGGATATGGATCGAACTATCTCACA 601941 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||||||||||||| || || |||||||||||||||| |||||| ||||| || | Sbjct 601940 ACGTTCTGAACCCAGCTAATGTACCGCTTTAATGGGCGAACAACCCAACTCTTGGAACAT 601881 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 ||| ||||||||| | || |||||||||| Sbjct 601880 ACTACAGCCCCAGTTGGCGAAGAGCCGACAT 601850 >seq3389 Length=699234 Score = 178 bits (196), Expect = 2e-42 Identities = 187/243 (77%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||||| ||| |||| ||| |||||| | | | | ||| Sbjct 14746 CTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTTGCTACCCAGCGTTTACCGTAAGCA 14805 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| ||| |||||| ||||| ||| | || |||||||||| ||| || |||| Sbjct 14806 TAATAACTGGTACACTAGAGGTGTGTCCTTCCTGATCTTCTCGTACTAGGGAAAGGTCCT 14865 Query 136 CTCAAA--TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 ||||| ||| ||| | ||| | |||| ||||| |||| |||| |||||||||||| Sbjct 14866 CTCAATGCTTTAATACCCACACCA--GATATGGACCAAACTATCTCACGACGTTCTGAAG 14923 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||||||| ||| | ||||||||||| |||| ||||||||||| || |||| | |||| Sbjct 14924 CCAGCTCACGTACTGCTTTAATGGGCAAACAATCCAACCCTTGGAACATACTAGAACCCC 14983 Query 254 AGG 256 ||| Sbjct 14984 AGG 14986 >seq1442 Length=9076 Score = 174 bits (192), Expect = 2e-41 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| | |||||||| |||| |||| |||||||| ||||| | | || Sbjct 8204 GGCACGATAACTGGTACGCCAGAGGTGCGTCCTTCCCAGTCCTCTCATACTAGGAAAAGG 8263 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| ||| | || || | ||| ||| |||||| |||| ||||||||||| Sbjct 8264 TCCTCTCAATGCTCCAATGCTCATACCAAATATGGATCGAACTTTCTCACGACGTTCTGA 8323 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| | |||||||||||||||||||||||||||| || |||| |||| Sbjct 8324 ACCCAGCTCACGTATCGTTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTATAGCC 8383 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||| | || |||| ||||||| Sbjct 8384 CCAGGTGGTGAAGAGCTGACATCG 8407 >seq3309 Length=426299 Score = 131 bits (144), Expect = 3e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| |||||||||||||||||||| ||| || ||||||| |||||||||||| Sbjct 129751 CGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATAGGCGAACAGCCC 129692 Query 229 AACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||| ||||| |||| | || ||||| |||||| Sbjct 129691 AACCCTTGGAACATACTACAGCCTCAGGTGGCGAAGAGCCAACATCG 129645 >seq3454 Length=1104993 Score = 95.1 bits (104), Expect = 2e-17 Identities = 173/252 (69%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| || | |||| ||||| ||| |||| ||| |||||| Sbjct 415619 GGTGGGCTTACTACTTAAATACTTTCAATAGTTATCTACTCCGCACTTGGCTACCCAGCA 415560 Query 64 ATGCACTTGGCAGTAC---AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | ||| |||| |||| || ||| |||||| ||||| | ||||||||||||| Sbjct 415559 TTTATCGTGG--GTACGATAACTTGTACACTAGAGGTGTGTCCTTTTCGGTCCTCTCGTA 415502 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 | | | ||| |||||| | ||| ||| ||||| || | || |||||| Sbjct 415501 TTGGAAAAAACTCTTCTCAATGCTTTAACGTTCACATTGGATATAGATCAAATTGTCTCA 415442 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 || ||||| || ||| ||||| | || |||||||| ||||||| || ||| | ||| || Sbjct 415441 TGATGTTCTAAATCCAACTCGCATACCGCTTTAATGAGCGAACAACCGAACTCCTGGAAC 415382 Query 241 CTACTTCAGCCC 252 |||| ||| || Sbjct 415381 ATACTACAGACC 415370 >seq3507 Length=2795260 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 150 GCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTC 209 |||||| | ||| ||||| | |||| || || ||| ||||||||| || | | || | Sbjct 1700787 GCCCACACCAAATATGGACCAAGCTGTTTCATGATGTTTTGAACCCAGTTCACTTACCGC 1700846 Query 210 TTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCG 269 |||| ||||| ||||||||||||||||| || || | ||| |||| | || |||||| Sbjct 1700847 TTTAGTGGGCAAACAGCCCAACCCTTGGAACATATTAAGGCCTCAGGTGGCGAAGAGCCG 1700906 Query 270 ACATCG 275 |||||| Sbjct 1700907 ACATCG 1700912 >seq3402 Length=834258 Score = 91.5 bits (100), Expect = 2e-16 Identities = 181/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| | ||| || | |||| ||| | ||| | | || || | Sbjct 493836 CTTAGATGCTTTCAGCAAT-ATCTGTTATACACTTGGCTATCTAGCGTTTATTCTGGGTA 493778 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || |||| ||| |||||| ||| |||||| |||||||| || | | || | || Sbjct 493777 TGATAATTGGTACACTAGAGGTGCATCCTTCCCGGCCCTCTCGTGTTAGGAAAAGGTGCT 493718 Query 136 CTCAAA--TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 ||||| ||| || | ||| | | ||| | ||||||||| ||| ||| || || Sbjct 493717 CTCAATACTTTAACACCCACACCAAGTCTAG--ATTGAACTGTCTTACGATGTTATGGAC 493660 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 || || ||| || ||||||| ||| |||| ||||||||||| | || | ||| || Sbjct 493659 TCAAGTCACGTACCGCTTTAATTGGCAAACATCCCAACCCTTGAAATATATTGCAG-CCT 493601 Query 254 AGGATGA-GACGAGCCGACAT 273 | ||||| | |||||||||| Sbjct 493600 ATGATGACAAAGAGCCGACAT 493580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780665633104