Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3135 159 8e-37 seq3507 156 1e-35 seq3475 152 1e-34 seq3480 136 1e-29 seq3462 132 1e-28 seq15599 120 7e-25 seq3430 114 3e-23 seq3252 96.9 8e-18 seq3487 86.0 2e-14 >seq3135 Length=45773 Score = 159 bits (176), Expect = 8e-37 Identities = 142/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||| | | ||| | ||| ||| ||||| |||| |||||||| || |||||| Sbjct 26873 GGCCTTCTACCTCCACACATCATTGCTCCATCAAGCTTTTGCCCATTGCCGAAAATTCCC 26814 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 |||||| |||| | |||||||||||| |||||||||||| ||| |||||||| ||||||| Sbjct 26813 CACTGCGGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCT 26754 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||||| || |||| ||| || | | | |||| | | |||||||||||||| Sbjct 26753 CTCAGACCAGTTACTGATCATCGTCTTGATAAGGTATTATCTCACCAACTAGCTAATC 26696 >seq3507 Length=2795260 Score = 156 bits (172), Expect = 1e-35 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71 |||| |||||||| | | || ||||||| ||| | |||||||| ||||||||| | || Sbjct 369389 CCCGTGGGCCTTCTACCTCCATGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAA 369448 Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 ||| | ||||| |||||| | |||||||||| || ||||||||| || ||||| || | Sbjct 369449 ATTTCTCACTGATGCCTCATGCAGGAGTCTGGGCCATGTCTCAGTCCCGTTGTGGTTGAT 369508 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| ||||||||| |||||||| || ||| || ||| | |||||||||| Sbjct 369509 CATCCTCTCGGACCAGCTACTGATCGTCGTCTTGGTAAGCTATTGTCTTACCAACTAGCT 369568 Query 192 AATC 195 |||| Sbjct 369569 AATC 369572 >seq3475 Length=2139848 Score = 152 bits (168), Expect = 1e-34 Identities = 148/188 (79%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 8 ACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTG 67 || ||||| |||||||| | | || | |||| ||| | |||||||| ||||||||| Sbjct 685428 ACCACCCGTGGGCCTTCTACCTCCATACAGCATTGCTTCGTCAGGCTTTCGCCCATTGCA 685487 Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 || ||||||||||| ||||||| ||||||||| || ||||||||||| |||||||||| Sbjct 685488 AAA-ATTCCCCACTGTTGCCTCCTGTAGGAGTCAGGGTCGTGTCTCAGTCCCAGTGTGGC 685546 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||||||||||||| ||| |||| || || ||| ||| || | | |||| Sbjct 685547 TGATCATCCTCTCAGACCAACTACTGATCATCATCTTGGT--AATATTGCCTCACTAACT 685604 Query 188 AGCTAATC 195 |||||||| Sbjct 685605 AGCTAATC 685612 >seq3480 Length=1794408 Score = 136 bits (150), Expect = 1e-29 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 51 GGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 |||| | ||||||| | || |||||||||||||| ||||||||||||||||| ||| | Sbjct 776118 GGCTCACACCCATTGCGGAAAATTCCCCACTGCTGTCTCCCGTAGGAGTCTGGGTCGTAT 776177 Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 |||||| ||||||||||| |||| ||||| |||||||| |||| | ||| ||| | Sbjct 776178 CTCAGTCTCAGTGTGGCTGATCATACTCTCGAACCAGCTACTGATCATTGCCATGGTAAG 776237 Query 171 CCATTACCCCGCCAACTAGCTAATC 195 | ||| || | |||||||||||||| Sbjct 776238 CTATTGCCTCACCAACTAGCTAATC 776262 >seq3462 Length=1892704 Score = 132 bits (146), Expect = 1e-28 Identities = 180/249 (72%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||||| |||||||||||| | ||||||| || |||||||||| |||||| Sbjct 453571 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGATGATCATCCTCTCGGACCAG 453630 Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTC 207 ||| |||| |||||| ||| || ||| || | |||||||||||||| | | | | Sbjct 453631 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 453690 Query 208 ATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTA 267 ||| || ||| ||| ||| ||| || | | | || | ||||||| Sbjct 453691 CTCCTCGAG-CAGA---------TTCCTCCT-TTTACTCCTCAGCC--TACGGGGTATTA 453737 Query 268 GCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCG 327 || |||||||||| ||| | ||||||| ||||| ||| | | |||||||||| Sbjct 453738 GCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCA 453797 Query 328 TCCGCCACT 336 ||||||||| Sbjct 453798 TCCGCCACT 453806 >seq15599 Length=3399 Score = 120 bits (132), Expect = 7e-25 Identities = 91/106 (86%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 90 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149 |||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 2 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 61 Query 150 AGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | |||| |||||| ||| || ||| | | |||||||||||||| Sbjct 62 ACTGATCATCGCCTTGGTAAGCTATT-GCTCACCAACTAGCTAATC 106 >seq3430 Length=1054395 Score = 114 bits (126), Expect = 3e-23 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| |||||||| | | | || |||| ||| ||||| |||| || | ||| Sbjct 210102 TTCACGACCCATGGGCCTTCTACCTTGATGCAGCATTGCTCCATCAAGCTTTCGTCTATT 210043 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || || ||| ||| |||||| | |||||||||||| ||| ||| ||| |||||| Sbjct 210042 GTAGAAAATTTTCCAATGCTGCATTTCGTAGGAGTCTGAGTCGTATCTTAGTCTCAGTGT 209983 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || || |||| |||||||||||| || |||| |||||| ||| ||| | | ||| Sbjct 209982 GGTTGATCATTCTCTCAGACCAGTTATTGATCATCGCCTTGGTAACTTATTGTCTCACCA 209923 Query 185 ACTAGCTAATC 195 ||||| ||||| Sbjct 209922 ACTAGTTAATC 209912 >seq3252 Length=95957 Score = 96.9 bits (106), Expect = 8e-18 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | |||| ||| || |||||||| || |||| Sbjct 81279 TTCACGACCCGTGGGCCTTCTATCTCTGCGCGACATTCCTCTGTCAGGCTTTTGCTCATT 81338 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || || | ||||||||| ||||||| |||||||| ||||||||| | |||||| Sbjct 81339 GTAAAAAAAATTTCACTGCTGCATCCCGTAAGAGTCTGGGTCGTGTCTCAATCTCAGTGT 81398 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | || | ||||||||| |||||||| |||| | | ||| || ||| | | | | Sbjct 81399 GCCTAATTATCCTCTCAAACCAGCTACTGATCATTATTTTGGTAAGCTATTGTCTCACTA 81458 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 81459 ACTAGCTAATC 81469 >seq3487 Length=2134545 Score = 86.0 bits (94), Expect = 2e-14 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||||||| ||||| | || ||| ||||| || | |||||||| | | || Sbjct 313169 TTCACAACCCGTGGGCCTACCTCT---ACGTGGCATTACTTCGTCAGGCTTTTGTCTGTT 313225 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || ||| || || |||| | ||| ||||||| | || | ||| ||| ||||| Sbjct 313226 GAAGAAAATTTCCG-CTACTGCACCTCGTTGGAGTCTAGGCCATATCTTAGTCTTAGTGT 313284 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||| ||| | |||| ||| || ||| | ||| || | ||| Sbjct 313285 GGCTGATCATCCTCTCAGACAAGCAATTGATCATCGTCTTGGTAAGTTATTGCCTCACCA 313344 Query 185 ACTAGCTAAT 194 |||| |||| Sbjct 313345 ACTACTTAAT 313354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222182852864