Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3135 242 1e-61 seq3475 185 3e-44 seq3507 172 2e-40 seq3430 159 1e-36 seq3252 154 4e-35 seq3480 143 8e-32 seq3462 131 5e-28 seq15599 129 2e-27 seq3412 102 2e-19 seq3487 98.7 3e-18 seq1627 82.4 2e-13 seq3486 75.2 3e-11 >seq3135 Length=45773 Score = 242 bits (268), Expect = 1e-61 Identities = 267/353 (76%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| ||| |||||||||||||||||||||| || ||| |||| |||| ||| |||| Sbjct 26679 AGGAGGGACTCGCGTCTGATTAGCTAGTTGGTGAGATAATACCTTATCAAGACGATGATC 26738 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | | |||||||| ||||| |||||||||| |||||||||||| ||| ||||||| Sbjct 26739 AGTAACTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAGACTCCTA 26798 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 | | |||| |||||||||||| || |||||||||||||| ||||| ||||| | | | Sbjct 26799 CAGAAGGCCGCAGTGGGGAATTTTCGGCAATGGGCAAAAGCTTGATGGAGCAATGATGTG 26858 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA 387 || | ||||||| | |||| | || ||| | | ||| ||||| ||||| |||| Sbjct 26859 TGGAGGTAGAAGGCCCACCGGTCATGAACTTCTTTTCCCAAAGAAGAAGCAATGATGGTA 26918 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 | ||| || | | ||||||| ||||||||||||||| |||||| ||| | | Sbjct 26919 TCCGGGGAATAACCATCAGCTAACTCTGTGCCAGCAGCCGCGATAATACAGAGGATACAA 26978 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| |||||| | | || |||||| | |||||||| || |||| || Sbjct 26979 ACGTTATTCGGAATGA-TTGGATGTAAAGCATCTGTAGGTGGCTTTTTAATTC 27030 >seq3475 Length=2139848 Score = 185 bits (204), Expect = 3e-44 Identities = 247/339 (73%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||||||||||||||| || ||| || |||||||| || ||||||||| | |||| Sbjct 685615 TCTGATTAGCTAGTTAGTGAGGCAATA--TTACCAAGATGATGATCAGTAGTTGGTCTGA 685558 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| ||||||||||| || |||||||| ||||||| |||| Sbjct 685557 GAGGATGATCAGCCACACTGGGACTGAGACACGACCCTGACTCCTACAGGAGGCAACAGT 685498 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| || |||||||| ||||||||| | ||||| || | || | |||||| Sbjct 685497 GGGGAAT-TTTTGCAATGGGCGAAAGCCTGACGAAGCAATGCTGTATGGAGGTAGAAGGC 685439 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGC 401 | ||||| || | ||| | | || ||||| ||||| || | ||| |||| Sbjct 685438 CCACGGGTGGTGCATTTCTTTTCCCAGAGAAGAAGCAATGAAAGTGTCTAGGGAATAAGC 685379 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 |||||||| |||||| |||| |||||||| || || || ||||||| |||| Sbjct 685378 ATTGGCTAACTTTATGCCAGTAGCCACGGTAATATAGAGAATGCAAGTGTTATCCAGAAT 685319 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||| ||||| | ||| ||||| | ||||||| Sbjct 685318 GA-TTGGGCATAAAGCATTTGTAAGTGGTCTTTTAAGTC 685281 >seq3507 Length=2795260 Score = 172 bits (190), Expect = 2e-40 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||||||| || |||||||||| |||||||||||||| | Sbjct 369579 CGCGTCTGATTAGCTAGTTGGTAAGACAATAGCTTACCAAGACGACGATCAGTAGCTGGT 369520 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| ||||| || ||||||||| || ||| |||||| | |||||| Sbjct 369519 CCGAGAGGATGATCAACCACAACGGGACTGAGACATGGCCCAGACTCCTGCATGAGGCAT 369460 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| | ||| || | |||||||| ||||||||| | ||||| ||||| || | || Sbjct 369459 CAGTGAGAAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCATGGAGGTAGA 369400 Query 340 AGGCCTTCGGGTCGTAAA 357 ||||| |||| ||| || Sbjct 369399 AGGCCCACGGGCCGTGAA 369382 >seq3430 Length=1054395 Score = 159 bits (176), Expect = 1e-36 Identities = 242/342 (71%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| ||||||| ||||||||| || || |||||||||||| ||||| || | | | Sbjct 209906 GCGACTGATTAACTAGTTGGTGAGACAATAAGTTACCAAGGCGATGATCAATAACTGGTC 209965 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| ||||| || ||| ||| ||| || ||||||||| | ||||| Sbjct 209966 TGAGAGAATGATCAACCACACTGAGACTAAGATACGACTCAGACTCCTACGAAATGCAGC 210025 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 | ||| ||| || ||||| | | ||||| ||||| ||||| || || | | | ||| Sbjct 210026 ATTGGAAAATTTTCTACAATAGACGAAAGCTTGATGGAGCAATGCTGCATCAAGGTAGAA 210085 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGA 398 |||| ||||||| || ||| | || |||| | ||||||| || ||| || | Sbjct 210086 GGCCCATGGGTCGTGAACTTCTCTTTTCGGAGAAGAAACAATGACGATATTTGGAGAATA 210145 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| | ||| | | || |||||| ||| || |||||||| ||| Sbjct 210146 AGCATCGGCTAACTCTATACCAATAACTGCCATAATACAGAGGATGCAAGCGTTATTCGG 210205 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | || |||||| | |||||| ||| ||||||| Sbjct 210206 AATTA-TTGGACGTAAAATATTTATAGGTGATTTTTTAAGTC 210246 >seq3252 Length=95957 Score = 154 bits (170), Expect = 4e-35 Identities = 241/340 (71%), Gaps = 5/340 (1%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||||||||||||||| || || || ||||||||| | |||||||||| | ||| Sbjct 81472 TCTGATTAGCTAGTTAGTGAGACAATAGCTTACCAAAATAATGATCAGTAGCTGGTTTGA 81413 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| | || | |||| || | ||||||||| ||| |||| ||||||| |||||||| Sbjct 81412 GAGGATAATTAGGCACACTGAGATTGAGACACGACCCAGACTCTTACGGGATGCAGCAGT 81353 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-GAAGG 342 | | || |||||| |||||||||||| || || | |||| || ||| ||||| Sbjct 81352 GAAATTTTTTTTACAATGAGCAAAAGCCTGACAGAGGAATGTCGCG-CAGAGATAGAAGG 81294 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAG 400 || |||||||| || ||| | | | ||||| ||||| |||| || | || Sbjct 81293 CCCACGGGTCGTGAACTTCTTTTCCTAGAGAAGAAGCAATGATGGTATCCAAGAAATAAA 81234 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 | |||| | ||| ||||| ||||||||||| || | |||||||||| ||| Sbjct 81233 TATCAACTAATTTTGTGTCAGCAATCGCGGTAATACAAAGCAAGTAAGCGTTATCCAGAA 81174 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | ||||||| | ||||||||| || ||||||| Sbjct 81173 TTA-TTGAACGTAAAGCATACGTAGGTGGCTTTTTAAGTC 81135 >seq3480 Length=1794408 Score = 143 bits (158), Expect = 8e-32 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||| ||| | |||||||||| | Sbjct 776269 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCATGGCAATGATCAGTAGCTGGT 776210 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||| ||||| |||||| || ||||||| ||| ||| ||||||||||||| ||| Sbjct 776209 TCGAGAGTATGATCAGCCACACTGAGACTGAGATACGACCCAGACTCCTACGGGAGACAG 776150 Query 280 CAGTGGGGAATATTGCACAATGGG 303 ||||||||||| || | ||||||| Sbjct 776149 CAGTGGGGAATTTTCCGCAATGGG 776126 >seq3462 Length=1892704 Score = 131 bits (144), Expect = 5e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 453685 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 453626 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 | |||||| ||||| ||||| | | |||||||||||| ||| |||||||||||| Sbjct 453625 CCGAGAGGATGATCATCCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGA 453571 >seq15599 Length=3399 Score = 129 bits (142), Expect = 2e-27 Identities = 97/113 (86%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| || || |||||||||||||| |||||||||| | Sbjct 113 CGCGTCTGATTAGCTAGTTGGTGAGC-AATAGCTTACCAAGGCGATGATCAGTAGCTGGT 55 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGG 272 | |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||| Sbjct 54 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGG 2 >seq3412 Length=755790 Score = 102 bits (112), Expect = 2e-19 Identities = 120/157 (76%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTA-CTTGAGGAGGAAGCCCCG 405 |||||| || ||| | | || ||||| ||||| |||| | | ||| |||| || Sbjct 407627 GGTCGTGAACTTCTTTTCCCATAGAAGAAGCAATGATGGTATCCGGGGGAATAAGCATCG 407568 Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTAGCGTTATCCGGAATTA 463 ||||| | ||||||||||||||| |||||| ||||| || ||||||||||||||| | Sbjct 407567 GCTAATTCTGTGCCAGCAGCCGCGATAATAC--AGGGGATGCAAGCGTTATCCGGAATGA 407510 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| || |||||||| || ||||||| Sbjct 407509 -TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 407474 >seq3487 Length=2134545 Score = 98.7 bits (108), Expect = 3e-18 Identities = 211/310 (68%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 ||||| |||| |||||||| ||| || ||||||||| ||| ||||| | || || Sbjct 313360 CGTCTAATTAAGTAGTTGGTGAGGCAATAACTTACCAAGACGATGATCAATTGCTTGTCT 313301 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| | ||| ||| | || | | ||||| ||| | |||| | Sbjct 313300 GAGAGGATGATCAGCCACACTAAGACTAAGATATGGCCTAGACTCCAACGAGGTGCAGTA 313241 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 | || ||| || ||| | ||||||||||| | || || ||| ||| || | || Sbjct 313240 GCGGA-AATTTTCTTCAACAGACAAAAGCCTGACGAAGTAATGCCACGT---AGAGGTAG 313185 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA-CTTGAGGAGGA 398 ||| ||||| || || ||| | | | ||||| |||||| | | || ||||| | Sbjct 313184 GCCCACGGGTTGTGAACTTCTTTTCCTAGAGAAGAAGCAATGACAGCATCTAGAGGA-TA 313126 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| | | ||||| || | | |||| | ||||| ||| || | |||||||| Sbjct 313125 AGCATCAGGTAACTCTGTACAAATAGCCACAATAATAAAAAGGATGCAAATGTTATCCGA 313066 Query 459 AATTACTGGG 468 ||| | |||| Sbjct 313065 AATGATTGGG 313056 >seq1627 Length=12052 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 258 TCCAAACTCCT-ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATG 316 ||||||||||| ||| ||| || ||||| ||||| || ||||||||||||||||||||| Sbjct 1407 TCCAAACTCCTTACGAGAGACAACAGTGAGGAATTTTTTACAATGGGCAAAAGCCTGATG 1466 Query 317 CAGCAACGCCGCGT-GAGCGATGAAGGCC 344 ||||| | ||| | ||| || |||||| Sbjct 1467 GAGCAATGTCGCATGGAGGTATAAAGGCC 1495 >seq3486 Length=2184632 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCT-GAGAGGGTGATCGGCCACATTGGAACTGAG 251 |||||||||||| |||||| | || | |||| | ||||| | ||| ||| |||| Sbjct 666046 TTACCAAGGCGATGATCAGG---CTACTTCGAGATGATGATCATC-ACAATGGGGCTGAA 665991 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 ||| | | ||||||| ||||||||||| | ||||||||| || | |||| || |||| | Sbjct 665990 ACATGATTCAAACTCTTACGGGAGGCAACCGTGGGGAATTTTTTATAATGTGCGAAAGTC 665931 Query 312 T 312 | Sbjct 665930 T 665930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497333966336