Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3135 168 2e-39 seq3475 149 2e-33 seq3451 120 7e-25 seq3412 107 5e-21 seq3484 80.6 6e-13 seq3252 78.8 2e-12 seq3424 75.2 3e-11 >seq3135 Length=45773 Score = 168 bits (186), Expect = 2e-39 Identities = 233/325 (72%), Gaps = 1/325 (0%) Strand=Plus/Plus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 ||||||| ||||||||||||||| |||||| ||| | | |||||| |||||| | | Sbjct 26937 GCTAACTCTGTGCCAGCAGCCGCGATAATACAGAGGATACAAACGTTATTCGGAATGATT 26996 Query 81 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCC 140 || |||||| | |||||||| || |||| || | || | | || |||||| || Sbjct 26997 GGATGTAAAGCATCTGTAGGTGGCTTTTTAATTCCGTCGTCACATCTCATAGCTCAATCC 27056 Query 141 CGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTG 200 || | | |||||| | ||| |||| ||| ||||| || |||||| | | || Sbjct 27057 TGGACAAACAGTGGAAACTACCAAGCTGGAGTACAGTAGGGGTAAA-GGAATTTCAAATG 27115 Query 201 TAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACT 260 ||||| ||||| |||| | || | | |||||||| |||||| || || ||| || Sbjct 27116 GAGCGGCGAAATACGTAAAGATCGGAAAGAACACCAACGGCGAAAGCATTCTGTTGGGCT 27175 Query 261 GTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTC 320 |||||||||||| |||||| || | || || |||||||||||||| |||||| Sbjct 27176 AATACTGACACTGAGAGACGAAAGTTAGGAGGGCGAATGGGATTAGATACCCTAGTAGTC 27235 Query 321 CACGCCGTAAACGATGAATACTAGG 345 ||||||||||||| |||||||| Sbjct 27236 ATAGCCGTAAACGATGGATACTAGG 27260 >seq3475 Length=2139848 Score = 149 bits (164), Expect = 2e-33 Identities = 271/393 (69%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| |||||| |||| |||||||| || || || ||||||| |||| | Sbjct 685375 GGCTAACTTTATGCCAGTAGCCACGGTAATATAGAGAATGCAAGTGTTATCCAGAATGAT 685316 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||| ||||| | ||| ||||| | ||||||| | |||||| || ||||| || Sbjct 685315 TGGGCATAAAGCATTTGTAAGTGGTCTTTTAAGTCTGCCGTGAAATCCTTAAGCTCAGCC 685256 Query 140 CCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | || | | || ||||| | ||| |||| || ||||||| |||||| | | Sbjct 685255 TTAG-ACAGGTGATGGAAACTACCAAGCTGGAGTACAATAGGGGCATAGGGAATTTTTGG 685197 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 || |||||||||||| |||| ||||| | ||||| || | |||| || ||| || Sbjct 685196 TGGAGCGGTGAAATGGGTAGGGATTAGAAAGAACATCAACGACGAAAGCACTTTGTCGGG 685137 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | | ||||| | |||| | |||| ||||| | || ||||||||| || |||| Sbjct 685136 CCGATACTGATAGTGAGAGACAAAAGATAGGGGAACGAATGAGATTAGATATCCCAGTAG 685077 Query 319 TCCACGCCGTAAACGATGAATACTAGGTG---TCGGGGCGCATAAGTGCTCCGGTGCCGC 375 ||| ||| ||| ||||| |||||| ||| | | ||| |||| | ||| | Sbjct 685076 TCCTAGCCATAACCGATGGATACTACGTGCTATGTGTATCCATCAGTG---CAGTGTTGT 685020 Query 376 AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| ||| ||||||| |||||||||||||| Sbjct 685019 AGCTAACATGTTAAGTATCCCACCTGGGGAGTA 684987 >seq3451 Length=1402134 Score = 120 bits (132), Expect = 7e-25 Identities = 206/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 |||||||||||||| ||||||| ||| || || ||||| ||||| | || | ||||| Sbjct 965416 GTGCCAGCAGCCGCAGTAATACAAAGGACGCAAGTATTATCTGGAATGATTGAGTGTAAA 965357 Query 90 GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGC 149 | || || ||||| || |||||| || | ||| || | |||||||| || Sbjct 965356 GCGTCTGTTGGTGGCTTTTTAAGTTCGACATCAAATCTTAAGACTCAACCCTAAACAGGC 965297 Query 150 TTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA--TTCCTAGTGTAGCGGT 207 | |||||| ||| ||| ||| ||| || || |||| || | | || ||| | Sbjct 965296 GGTGGAAACTATCAAGCTGAAGTACAGTAGGAGC-AGAGGAAATTTACGA-TGAAGCAAT 965239 Query 208 GAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTG 267 ||||||| |||| || | |||||||| | || || | ||||| ||||| |||| Sbjct 965238 GAAATGCATAGAGATCGAAAAGAACACCAATTGC-AAAGTACTTTGCTAGACTGACACTG 965180 Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTC 320 |||||||| ||||||| ||||||||| ||||||||||||| |||||| Sbjct 965179 ACACTGAGAGACGAAAGCTAAGGGAGCAAATGGGATTAGATACCC-AGTAGTC 965128 >seq3412 Length=755790 Score = 107 bits (118), Expect = 5e-21 Identities = 165/237 (70%), Gaps = 30/237 (13%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTAGCGTTATC 70 |||| ||||||| | ||||||||||||||| |||||| ||||| || ||||||||| Sbjct 407575 AAGCATCGGCTAATTCTGTGCCAGCAGCCGCGATAATAC--AGGGGATGCAAGCGTTATC 407518 Query 71 CGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTAT 130 |||||| | ||||||||||| || |||||||| || ||||||| | || || Sbjct 407517 CGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGTCGTCAA------- 407465 Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 | ||| ||||| || ||| |||| | | ||||||| ||| Sbjct 407464 -----ATTCCCAGGACT-------------CA-AGCTGGAGTACGGTAGGGGCAGAGGGA 407424 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 ||| | ||| ||||| |||||||||||| || | | |||||||| |||||| || Sbjct 407423 ATTTCCGGTGGAGCGGCGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 407367 >seq3484 Length=2098481 Score = 80.6 bits (88), Expect = 6e-13 Identities = 132/184 (72%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 127 CTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA-GGGGCAA 185 ||| |||||||||| || || | ||| || | ||| |||| | || ||||||| Sbjct 647546 CTAGGGCTCAACCCTAGGTAGGCGATGGAAGCTACCAAGCTGGAGT--ATGATGGGGCAA 647603 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 |||||| ||||| ||||||||||||| || | |||| || |||||||||||| ||| Sbjct 647604 AGGGAATTTTTAGTGGAGCGGTGAAATGCATACAAATTAAGAAGAACACCAGTGGTGAAA 647663 Query 246 GCGGCTTGCTGGACTGTAACTGACACT-GAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || || ||| ||| |||||| | | | ||||| ||||||||||| |||| Sbjct 647664 GC-ACT--CTGCTAAGTA---GACACTAGGAGATGAAAAGCTTGGGGAGCAAATGGGATA 647717 Query 305 AGAT 308 |||| Sbjct 647718 AGAT 647721 >seq3252 Length=95957 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||| | ||| ||||| ||||||||||| || | |||||||||| |||||| || Sbjct 81227 CTAATTTTGTGTCAGCAATCGCGGTAATACAAAGCAAGTAAGCGTTATCCAGAATTATTG 81168 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||||| | ||||||||| || ||||||| | || ||| | || |||||||| Sbjct 81167 AACGTAAAGCATACGTAGGTGGCTTTTTAAGTCTGTCGTCAAATCCCATAGCTCAACC 81110 >seq3424 Length=910632 Score = 75.2 bits (82), Expect = 3e-11 Identities = 114/161 (71%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | || |||||| ||||||||||| || | | |||||||| | |||| | Sbjct 494433 GGAATTTTCAATGGAGCGGTAAAATGCGTAGAGATCAAAAAGAACACCAACGACGAAAGT 494374 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA-CAGGATTAG 306 || || || | |||||||||||| || |||| |||| |||| ||||||| Sbjct 494373 ACTTTACTAAACCGACACTGACACTGAGAGACGGAAGCTAAGGGAACAAATGGGGATTAG 494314 Query 307 ATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 ||| || ||| | | || ||||| |||| |||| ||||| Sbjct 494313 ATATCCCAGTAATTCTAGCAGTAAATGATGGATACCAGGTG 494273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202986263552