Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1727 318 1e-84 seq5242 313 5e-83 seq7581 304 2e-80 seq3516 286 7e-75 seq3765 228 2e-57 seq9231 181 2e-43 seq15742 161 2e-37 seq3494 107 4e-21 seq3366 89.7 1e-15 seq2594 78.8 2e-12 >seq1727 Length=11058 Score = 318 bits (352), Expect = 1e-84 Identities = 231/264 (88%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 6294 GCCGGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 6236 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 6235 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 6176 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 6175 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 6117 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 6116 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 6057 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 6056 TTGACTACGTCCCTGCCCTTTGTA 6033 >seq5242 Length=1196 Score = 313 bits (346), Expect = 5e-83 Identities = 230/264 (87%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 754 GCCGGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 696 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 695 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 636 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 635 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 577 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct 576 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAATAAGCGCGAGTCATCAGCTCGCG 517 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 516 TTGACTACGTCCCTGCCCTTTGTA 493 >seq7581 Length=1513 Score = 304 bits (336), Expect = 2e-80 Identities = 228/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||||| |||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 441 GCCGGTTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 499 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| Sbjct 500 TCTGTGATGCCGTTAGATGTTGTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 559 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 560 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 618 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 619 TCATTGCAATTGTTGGTTTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 678 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||||| Sbjct 679 TTGATTACGTCCCTGCCCTTTGTA 702 >seq3516 Length=6239366 Score = 286 bits (316), Expect = 7e-75 Identities = 224/264 (85%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||||| || |||| | ||| | ||| | |||||||| ||||||||||| | Sbjct 2422025 GCCGGCTTCTTAGACGGGCTATGGCCGCTTAGGCCAA-GGAAGTTTAAGGCAATAACAAG 2422083 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2422084 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 2422143 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 2422144 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 2422202 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| |||||||||| |||| ||||||||||||| ||||||||| ||| Sbjct 2422203 TCATTGCAATTGTTGGTCTTCAACGAAGAATTCCTAGTAAGCGCGAGTCATCAGCTTGCG 2422262 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||| ||||||| Sbjct 2422263 TTGACTACGTCCCTGCTCTTTGTA 2422286 Score = 244 bits (270), Expect = 2e-62 Identities = 215/264 (81%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || ||||| ||||||||| ||| | | | || ||| |||||||||||||||||||| || Sbjct 2669500 GCTGGCTTTTTAGAGGGATTATGGCCACTTAGGCGAAGGAAGTTTGAGGCAATAACAAGT 2669559 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || |||||||||||||||||||||||| ||| |||||||||||| | ||||||||| Sbjct 2669560 CTATGATGCCCTTAGATGTTCTGGGCCACACATGCGCTACACTGATGTATTCAACGAGTT 2669619 Query 186 CATCACCTTGGCCGG-AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||| ||| | ||| | |||||||||| | ||| | ||||| ||| |||||| Sbjct 2669620 TATAGCCTAGGCTGACAAGCCCCGGGTAATCTT-TAAAATTTCATCGTGATGGAGATAGA 2669678 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 ||||| |||| ||| ||||||||||||||| ||||||||| | | ||||||||| |||| Sbjct 2669679 TCATTGTAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGTGCGTCATCAGCTCGCG 2669738 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||| |||||||| Sbjct 2669739 TTGACTACGTCCCTGTCCTTTGTA 2669762 >seq3765 Length=752 Score = 228 bits (252), Expect = 2e-57 Identities = 210/262 (80%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||| ||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 306 GCCGGCTTCTTATAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 248 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| Sbjct 247 TCTGTGATGCCCTTATATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 188 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||| | Sbjct 187 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATACA 129 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||| || ||| ||||| | ||| ||||| | |||| ||| ||| | |||| Sbjct 128 TCATTGCCATGGTTGGTCTTCGGAGGAGAACTCCTAGCATCCGCGAGTCGTCATCTCGCG 69 Query 305 TTGATTACGTCCCTGCCCTTTG 326 | || || ||||||||||||| Sbjct 68 TGGACTAGTTCCCTGCCCTTTG 47 >seq9231 Length=1709 Score = 181 bits (200), Expect = 2e-43 Identities = 132/151 (87%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 1560 GCCGGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 1618 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1619 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 1678 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 | || ||||||||| ||| | |||||||| Sbjct 1679 TTATAGCCTTGGCCGACAGGCCCGGGTAATC 1709 >seq15742 Length=592 Score = 161 bits (178), Expect = 2e-37 Identities = 118/136 (87%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 592 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 534 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 533 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 474 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 473 GTCCCTGCCCTTTGTA 458 >seq3494 Length=2094846 Score = 107 bits (118), Expect = 4e-21 Identities = 96/119 (81%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||| ||||||||||||| || | | | || | | |||||||||||||||||| |||| Sbjct 747467 GCCGACTTCTTAGAGGGATTACAGTCACTTAGGCCAAGGAAGTTTGAGGCAATAATAGGT 747408 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||| |||||||||| |||||| || |||| ||||||||| | |||||||| Sbjct 747407 TTGTGATGCTCTTAGATGTTTTGGGCCCCATGCGCACTACACTGATGTACTCAACGAGT 747349 >seq3366 Length=527904 Score = 89.7 bits (98), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG--C 162 |||||||||||| ||||| | ||||||||| ||||||||| ||||||||| || || Sbjct 125046 AAGTTTGAGGCAGTAACAAGCCTGTGATGCTCTTAGATGTAATGGGCCGCATGCACGATA 125105 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 || ||||| | | |||||||||| | | ||| |||| |||| ||| || Sbjct 125106 TAAACTGATGTATTCGACGAGTTCATAA--TAGGC--GAAGAATCAAGTAACCTTCGAAA 125161 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 || | ||| |||| | | ||||| |||||||| ||||||| ||| ||| |||||| Sbjct 125162 TTTCAAT-GTGATGGG---AAATCATTGTAATTATTGGTCTTCAATGAGAAATTCCTAGT 125217 Query 283 AA 284 || Sbjct 125218 AA 125219 >seq2594 Length=22807 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/64 (89%), Gaps = 3/64 (5%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||||||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 12490 GCCGGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 12548 Query 125 TCTG 128 |||| Sbjct 12549 TCTG 12552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947031739392