Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq8269 188 2e-45 seq3505 150 6e-34 seq12082 118 4e-24 seq3479 113 2e-22 seq3416 96.9 1e-17 seq2719 93.3 1e-16 seq11227 80.6 9e-13 seq3484 75.2 4e-11 seq3324 75.2 4e-11 >seq8269 Length=1593 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 1590 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 1531 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 1530 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 1471 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 1470 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1411 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 1410 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1356 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 1355 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 1298 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 1297 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 1238 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 1237 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 1180 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 1179 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 1121 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 1120 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 1062 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 1061 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 1020 >seq3505 Length=2969368 Score = 150 bits (166), Expect = 6e-34 Identities = 192/258 (74%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || | ||| ||| |||| Sbjct 2571758 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTTACAAGCCTTGGA 2571817 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||| Sbjct 2571818 GGACCGAACCCACGTATGTGGCAAAATATGGGGATGATTTGTGGCTAGGGGTGAAAGGCT 2571877 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| ||| ||||| |||||| |||| || | | || Sbjct 2571878 AACCAAGATCGGATATAGCTGGTTTTCTGCGAAATCTATTTCAGTAGAGCGT--ATGATG 2571935 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGG-CTAGGGGG---TCATTGCGACTTACCAAA 266 | || | | ||||||||||| | |||| ||||| | |||| || ||||||| Sbjct 2571936 TCGATGGCCCGAGGTAGAGCACT-TAATGGATTAGGGTGGCCCCATTTCGCATTACCAAC 2571994 Query 267 CCATTGCAAACTCCGAAT 284 || | |||||| |||| Sbjct 2571995 CCCAGGGAAACTCTGAAT 2572012 >seq12082 Length=2169 Score = 118 bits (130), Expect = 4e-24 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 1580 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 1639 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| ||| |||||||| ||| || |||||| |||| ||||||||||| || | Sbjct 1640 GTCCGAACCAACTGATGTTGAAGAATCAGCAGATGAGTTGTGTTTAGGGGTGAAATGCCA 1699 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | ||| || |||||||||||| |||||| Sbjct 1700 CTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 1732 >seq3479 Length=1706892 Score = 113 bits (124), Expect = 2e-22 Identities = 119/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| | |||||||| ||||| ||||||||||| | ||| | || |||| Sbjct 98132 AGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGTTTGGGTGAAACTAAGTGGA 98073 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 |||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||| || || Sbjct 98072 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGT-CAATGCC 98014 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | ||| || |||||||||||| |||||| Sbjct 98013 ACTCGAACACAGAGCTAGCTGGTTCTC-CCGAAA 97981 >seq3416 Length=1141209 Score = 96.9 bits (106), Expect = 1e-17 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 ||||||| || | ||||||||||||||||||| ||||||| ||| | |||| |||||| | Sbjct 119413 GAGGTCCAAATCAACTAATGTTGAAAAATTAGTGGATGAGTTGTAGTTAGGTGTGAAATG 119472 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 ||| |||||| ||| || || |||||||||| || Sbjct 119473 CTACTCAAACTCAGAATTAACTAGTTCTCTCCGGAA 119508 >seq2719 Length=23099 Score = 93.3 bits (102), Expect = 1e-16 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||| || || ||| | | |||| ||| | || ||||||| ||||| | |||||||| Sbjct 15085 AGGGCAACTTTCACTGTTTATGGACCTGAACCTAATTGATCTATCCATGTCTAGGATGAA 15026 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | ||| | | |||||||| ||| ||| |||||||| ||| | ||||| Sbjct 15025 GCTTGGGTGAAATTAAATGGAGGTCTGAATTAACTGATGTTGAAGAATCGGCAGATGAAT 14966 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAA 188 ||||| ||||||||||| || | |||| | || ||||||||||| ||| |||| Sbjct 14965 TGTGGTTAGGGGTGAAATGCCACTTAAACATAGAGTTAGCTGGTTCT-TCCTAAAA 14911 >seq11227 Length=1999 Score = 80.6 bits (88), Expect = 9e-13 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | ||||| || ||||| ||| ||||||| | ||| | || ||||| Sbjct 1555 GACCCGAACCTGGGTGATTTATCCATGACCAAGATGAAGCTTGGGTGAAACTAAGTGGAG 1614 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 || ||||| ||| |||||||| ||| | |||||| || || || |||||||| || | Sbjct 1615 CTCTGAACCGACTGATGTTGAAGAATCAACAGATGAGTTGAGGTTAAGGGTGAAATGCCA 1674 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||| || |||||||||||| || Sbjct 1675 CTAGAACCCAGAGCTAGCTGGTTCTCCCC 1703 >seq3484 Length=2098481 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||| |||| ||| |||||||||||| || ||||| | | ||||| ||||||| Sbjct 414956 TGGAGGTCCAAACCAACTGATGTTGAAAAATCAGCAAATGAGTTAT-GGTAGAGGTGAAA 415014 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 |||| | ||| || ||| |||||||| |||||| Sbjct 415015 TGCTATTCGAACCCAGAGCTAGTTGGTTCTCCCCGAAA 415052 >seq3324 Length=362348 Score = 75.2 bits (82), Expect = 4e-11 Identities = 94/128 (73%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||| || | | |||||||| ||||| ||| |||||| | ||| | | ||||| Sbjct 120562 GACCCAAACCTAGGTGATCTATCCATGAACAGTATGAAGTTTGGGTGAATCTAAGTGGAG 120503 Query 95 GTCCGAACCCACTAATGTTGAAA-AATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||| || | ||||||| ||| || ||||||||||||| ||||| ||| || Sbjct 120502 GTTCGAACCAACAGAAGTTGAAAGAATAAGAGGATGAGCTGTGGTTAGGGACAAAATGCC 120443 Query 154 AAACAAAC 161 | ||||| Sbjct 120442 ACTCAAAC 120435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689299859456