Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq15129 105 1e-20 seq2719 80.6 5e-13 >seq15129 Length=3114 Score = 105 bits (116), Expect = 1e-20 Identities = 173/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || | | ||||| |||| || | | | ||| || Sbjct 341 ATGGTGGATACCTAGGCACCCAGAGACAAGGAAGGGCGTAATAAGCAACAAAATGCTTCG 282 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | ||||| ||||| |||||| || |||| ||| | Sbjct 281 GGGAGTT-GAAAATAAGCGTAGATCCAAAGATTCCCGAATAGGTCAACC------TTTCG 229 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||| ||| ||| || | |||| || ||| ||||||||||||||||| | Sbjct 228 AAC--TGC-TGCTTAATCCATGGGCAGGCAAGAGACAACTTGGCGAACTGAAACATCTTA 172 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||||| ||||||||||| ||| | ||||| ||||| |||||| ||||||||| Sbjct 171 GTAGCTAAAGGAAAAGAAAGCAAAAGTCGTTCCCGTAGTAGCGGCGAGTGAAATGGGAGC 112 Query 247 AGCCT 251 ||||| Sbjct 111 AGCCT 107 >seq2719 Length=23099 Score = 80.6 bits (88), Expect = 5e-13 Identities = 86/110 (78%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| || | |||| || ||| ||||||||||||||||| |||| || | Sbjct 15604 TGCTAAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTA-CTCAA 15546 Query 196 GGAAAA-GAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||| |||| ||| | |||||| |||||||| ||||||||| ||| Sbjct 15545 GGAAAATGAAAGCAAAAGTGATTCCTGTAGTAGTGGTGAGCGAAATAGGA 15496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918236855424