Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3396 109 2e-21 seq3389 102 3e-19 seq3479 84.2 7e-14 >seq3396 Length=760493 Score = 109 bits (120), Expect = 2e-21 Identities = 280/417 (67%), Gaps = 21/417 (5%) Strand=Plus/Minus Query 75 AACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACC 134 |||||||| |||||||||||| |||||||||| | || |||||| ||||| ||| Sbjct 601638 AACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCATAGAAACTGTTTACC 601580 Query 135 AGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAG 191 | |||||||| || || || || |||||||||| || | | |||| Sbjct 601579 TGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCTAACTCTTCTAGAG 601520 Query 192 TGGTATTTCAACAACGACTC----CACAACCACTAGCGTGGCCGCATCATAGTCTCCCAC 247 |||||| ||| | | ||| | | ||| || | |||| || | | || |||| Sbjct 601519 TGGTATCTCACTGATGGCTCAGGCCCCCCCCAGAAG-GAGGCCT--TCTTCGCCTTCCAC 601463 Query 248 CTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTC 306 ||| || || | | || ||| || ||| | | | ||||| | | ||||| Sbjct 601462 CTAAGCTGAGCA----GGA---AAAGCCCATCCCAGGGAACAATGAAGCTTCATAGGGTC 601410 Query 307 TTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGT 366 ||| ||| | ||| | | |||||| || | | | |||||||| | || | Sbjct 601409 TTTCTGTCTAGGTGCGAGTAGTCCACATCTTCACAGGCATGTCTATTTCACCAAGACTCT 601350 Query 367 GGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAG 425 | ||||||| | || |||||||||| |||||| |||| ||||||||||||||||| Sbjct 601349 CTTCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGTAGGTTGGAACTTACCCGACAAG 601291 Query 426 GAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||| ||||||||| || |||||||||| | |||||| || ||||||| || Sbjct 601290 AAATTTCACTACCTTAGCATCGTTATAGTTATGGCTGCCGTTCACCAGGGCTTCGAT 601234 >seq3389 Length=699234 Score = 102 bits (112), Expect = 3e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| Sbjct 15118 TCATTACGCCATTTGTGTGGGTCGGAACTTACTCGACAAGATATTTCGCTACCTTAGGAC 15177 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| ||| ||||||| | | ||||| Sbjct 15178 CATTATAGTTACGACCACCGTTTATTAGAGCTTC 15211 >seq3479 Length=1706892 Score = 84.2 bits (92), Expect = 7e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 590319 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 590378 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 590379 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 590437 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 590438 AGAAACTGTCTACCTGAGACTGTCCC 590463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702097585664