Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3135 93.3 9e-17 seq3475 84.2 5e-14 >seq3135 Length=45773 Score = 93.3 bits (102), Expect = 9e-17 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | | || | ||||| ||| ||| | | | ||| ||| || Sbjct 26894 AAAAGAAGTTCATGACCGGTGGG-CCTTCTACCTCCACACATCATTGCTCCATCAAGCTT 26836 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| | || ||||| |||||| |||| | |||||||| ||| ||||||||||| Sbjct 26835 TTGCCCATTGCCGAAAATTCCCCACTGCGGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAG 26776 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||||||||| || | |||||||||| Sbjct 26775 TCCCAATGTGGCTGATCATCCTCTCAGA 26748 >seq3475 Length=2139848 Score = 84.2 bits (92), Expect = 5e-14 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| | || ||||| ||||| ||||||| |||||||| || || Sbjct 685468 TCAGGCTTTCGCCCATTG-CAAAAATTCCCCACTGTTGCCTCCTGTAGGAGTCAGGGTCG 685526 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||| ||||| || | |||||||||| Sbjct 685527 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGA 685562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068610138368