Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3345 199 3e-46 seq3444 86.0 5e-12 >seq3345 Length=549657 Score = 199 bits (220), Expect = 3e-46 Identities = 576/876 (66%), Gaps = 19/876 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || || ||||| || || ||| |||||||| |||||||| || || |||| Sbjct 164400 TGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTTCT 164341 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG----CGTTTATCG 61179 |||||| |||||||| || | ||| | || || ||||||||| | || | || Sbjct 164340 GGACGGCCGAGGAGGTTGACCTCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAACG 164281 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || |||| || ||||| | || || | || || || ||||| || || || || Sbjct 164280 A-CGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATT 164222 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||||| | |||||| | || || || ||| | ||||| ||| Sbjct 164221 GTACTTGAGAATCTCGCTTCTCGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTCGTGCC 164162 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||| || ||||| || || || |||||| ||||||| |||||||||||| | || || Sbjct 164161 TTCTATGGGTTCCAAATCGCAATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCTC 164102 Query 61360 GATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 || || ||||| | ||| || ||| | | || | | || ||| | ||||| || Sbjct 164101 GAGACTTACATTAAGGACTCGAGCGAGAAG-GATCATCTCTTTCGCGCCGTTGAGACCAT 164043 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| ||| || |||||||| | |||||| | | ||| || Sbjct 164042 CCCTTGCGTGGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCGACGG---CTCGGAGAC 163986 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 |||| || || | |||| || || ||||| || | || ||| || || || Sbjct 163985 CTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTT 163926 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 ||| || || ||| |||| || || || || ||||| ||||| |||||| ||| || Sbjct 163925 CTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGA 163866 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 | | || ||||| ||||| || | ||||| || || || | |||| | | | || Sbjct 163865 GCTCATTTCACGAGACGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGTACGGA--TTA 163808 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | || |||| | | | || ||||||||| | | |||||| | || || || ||| Sbjct 163807 T-TGAGGAATAGGCTGAGTGAAGAGCGTGTGCGGGGGATTGTGAGGGATGCCGTGGATAT 163749 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||| ||||||| | ||||| | || | | | |||||||||| | | || Sbjct 163748 CGAGAGGGAATTTGTTTGCGACGCGCTCCCTTGCGCGTTGGTCGGCATGAACGGGGATCT 163689 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TATG--AA 61835 ||| ||||| || || || || || || || ||| ||| | | |||| ||| || Sbjct 163688 CATGAGTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTGGGTGCTCTGGGACATGGTAA 163629 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 ||| ||||| | || |||||||||| ||||| |||||||| | | || || Sbjct 163628 ---GATGTATAACGTGGCTAATCCATTTGATTGGATGGAGCTGATTTCGTTACAGGGTAA 163572 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| || ||||||||||| || |||||||| || || Sbjct 163571 GACCAACTTTTTCGAGAAGCGAGTAGGCGAGTACCA 163536 >seq3444 Length=1312069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 |||||||||||| |||| || | |||||| || |||| || | ||| ||| ||||| Sbjct 1023808 CCAAGCATAGAAGTGCAAGGAAGTTAATTTGCCAAAATTGGGTTGATCCATATGTATATT 1023867 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAA 65261 ||| |||||||||||| || || | |||||||| |||||||||||| Sbjct 1023868 CAAGCTCTGACTCTGATCTATATAGCATCCACGATCAACAGCCATGTCAA 1023917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397481927024960