Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq4995 816 0.0 >seq4995 Length=1147 Score = 816 bits (904), Expect = 0.0 Identities = 488/512 (95%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 4483 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4542 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 4543 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4602 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 4603 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 4662 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 4663 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 4722 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 273 Query 4723 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 4782 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 272 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 213 Query 4783 CTTGAGGGTGAATGCGAACAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 4842 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 153 Query 4843 CATGTTCATCGCTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 4902 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 152 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 93 Query 4903 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 4962 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 33 Query 4963 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 4994 |||||||||||||||||||||||||||||||| Sbjct 32 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 1 Score = 260 bits (288), Expect = 5e-65 Identities = 176/197 (89%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 4096 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 4155 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 767 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 708 Query 4156 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCG 4215 |||||||||||||||||||||||| |||||||||||||||||| ||||| || || |||| Sbjct 707 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 648 Query 4216 CAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 4275 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 588 Query 4276 CCAGAAGCGCCAGCGCA 4292 |||| || ||||| || Sbjct 587 CCAGCAGTTCCAGCACA 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175508569094544