Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq65439 379 3e-103 seq45150 233 3e-59 seq205602 138 2e-30 seq146204 111 2e-22 seq463350 102 1e-19 seq52753 100 4e-19 seq204309 96.9 5e-18 seq76621 87.8 3e-15 seq285309 86.0 9e-15 >seq65439 Length=1177 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 746 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 689 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 629 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||| |||||||||||||| | ||||||||||||||||||||||||| |||||||| Sbjct 628 CTCGGGCCTGTCGGCCAAGGCTGCATACTCGTTGAATACATCAGTGTAGCGTGCGTGCGG 569 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 568 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTTCGTGGCCTAAAAG 509 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 508 GCCATAGTCCCTCTAA 493 >seq45150 Length=6624 Score = 233 bits (258), Expect = 3e-59 Identities = 165/184 (90%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| |||||||| | |||||||||| |||| Sbjct 1225 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCACACTTACTAGGA-TTTC 1168 Query 61 CTCGTTGAAGACCAACAAT--TGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT 118 |||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||| || Sbjct 1167 CTCGTTTAAGACCAACAATATTGCAATGATCTATCCCCATCA-GATGAAACTTCAAATAT 1109 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | ||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||| Sbjct 1108 TTTTCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGTGTGC 1049 Query 179 GGCC 182 |||| Sbjct 1048 GGCC 1045 >seq205602 Length=1887 Score = 138 bits (152), Expect = 2e-30 Identities = 98/111 (88%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 ||| ||||||| ||||||||| ||||||||| ||||| || |||| |||||||||| ||| Sbjct 1477 ATATACTCGTTAAATACATCAATGTAGCGCGAGTGCGACCTAGAATATCTAAGGGCGTCA 1536 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA-TCTCCCTC 252 || || |||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 1537 CAAACTTGTTATTGCCTCAAACTTTCGTGGCCTAAAAGGCCATTTTCCCTC 1587 >seq146204 Length=23989 Score = 111 bits (122), Expect = 2e-22 Identities = 71/75 (95%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 22325 GTACAAAGAGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 22268 Query 61 CTCGTTGAAGACCAA 75 |||||| |||||||| Sbjct 22267 CTCGTTTAAGACCAA 22253 >seq463350 Length=4861 Score = 102 bits (112), Expect = 1e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 2778 AGTGTAGCATGCTCGCGGCCCAAAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAA 2837 Query 223 ACTTCCGTGGCCTAAAAGG 241 ||||| |||| || ||||| Sbjct 2838 ACTTCGGTGGGCTGAAAGG 2856 >seq52753 Length=16695 Score = 100 bits (110), Expect = 4e-19 Identities = 67/72 (93%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 6843 GTACAAAAGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCACTTACTAGGAA-TTC 6900 Query 61 CTCGTTGAAGAC 72 |||||| ||||| Sbjct 6901 CTCGTTAAAGAC 6912 >seq204309 Length=701 Score = 96.9 bits (106), Expect = 5e-18 Identities = 57/58 (98%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 640 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAATT 696 >seq76621 Length=4516 Score = 87.8 bits (96), Expect = 3e-15 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 243 |||| ||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||| Sbjct 3467 AGAAAATCTAAGGGAATCACAGACCTACTATTCCCTCAAACTTCCGTGGCCTGAAAGGCC 3526 Query 244 AT-CTCCCTCGAA 255 || |||||| || Sbjct 3527 ATAATCCCTCTAA 3539 >seq285309 Length=18633 Score = 86.0 bits (94), Expect = 9e-15 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 ||| |||| ||||||| ||||||| ||| || || || | |||||| |||||||||| Sbjct 7440 ATATACTCATTGAATATATCAGTGCAGCATGCATGTGGACGT-AACATCCAAGGGCATCA 7498 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 ||||||||| |||||| ||||||| | |||| | || | ||| Sbjct 7499 CAGACCTGTCATTGCCCCAAACTTTCATGGCTTGAAGGTCCA 7540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 748620444790