Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq102272 168 2e-39 seq128165 125 2e-26 seq156164 120 8e-25 seq242421 114 3e-23 seq195394 105 2e-20 seq140935 96.9 9e-18 seq16558 96.9 9e-18 seq273576 95.1 3e-17 seq102141 80.6 7e-13 seq105642 78.8 2e-12 seq154948 75.2 3e-11 >seq102272 Length=6284 Score = 168 bits (186), Expect = 2e-39 Identities = 283/402 (70%), Gaps = 7/402 (2%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| || ||||| |||||| |||||||||| ||| ||| |||||| |||| Sbjct 557 GAATAAGCATTGG-TAACTTTGTGCCAACAGCCGCGGTGGTACAGAGGATGCAAGTGTTA 499 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 498 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGATTT-TAAGTCCGCCGTCAAATCCC 440 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 |||| ||| || || | | ||| | || |||| || || || | | Sbjct 439 AAGGCTCAACTCTAGACAGGCGATGGAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGG 380 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| ||||||||||||| || | | ||||| ||| |||||| ||| Sbjct 379 GAATTTCCGGTGGAGCGATGAAATGCGTAGAGATCAGAAAGAACAGCAACGGCGAAAGCA 320 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||| |||||||| || | |||||||| |||||||||| |||||||||| Sbjct 319 CTCTGCTGCTCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATAGGATTAGAT 260 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCT-TG- 368 |||| |||||| ||| |||||||| ||||| |||| | || | | ||| || Sbjct 259 ACCC-ATTAGTCCTAGCCGTAAACGATGGATACTAGGCGTTGTGCATAT-CGACCTGTGC 202 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| || ||||||| ||| Sbjct 201 AGTGTAGTAGCTAACGCGTTAAGTATCCCTTCTGGGGAGTAC 160 >seq128165 Length=956 Score = 125 bits (138), Expect = 2e-26 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | |||||| ||||||| |||| |||| Sbjct 68 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATTCGTAAATATAC 127 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| | || ||||||||||| | ||||| || |||||| | |||||| Sbjct 128 GAAGGAATGCAAA--GCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 185 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| ||||||||| |||| | |||||||||| ||| |||||||| Sbjct 186 CATGGGGAGCGAACAGGATTCGATAACGTGGTAGTCCATGCCGTAAACGAT 236 >seq156164 Length=2708 Score = 120 bits (132), Expect = 8e-25 Identities = 113/143 (79%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||| Sbjct 147 TATCTGGGGAATAAGCATCGGCTAACTCTATGCCAGCAGCTGCGGTAATACAGAGGATGC 88 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| ||||||| | |||| ||||||||| | ||| || | | |||| | | || Sbjct 87 AAGCGTTATTCGGAATGATTGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 28 Query 123 GAAATCCCCGGGCTTAAC-CTGG 144 ||||||| ||||| ||| |||| Sbjct 27 CAAATCCCAGGGCTCAACTCTGG 5 >seq242421 Length=3517 Score = 114 bits (126), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 10/171 (6%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | ||||||| | |||||| ||||||| |||| |||| Sbjct 2576 ACTGGAGTGAGACAGAGGAGAGTGGAATCTCGTGTGTAGGGGTGAAATCCGTAAATATAC 2635 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| |||| ||||||||| | | ||||| | || ||| ||| ||||| Sbjct 2636 GAAGGAATGCCAAAAGCGAAGGCAACTCTCTGGGT---CCCT-ACG----TGC--GAAAG 2685 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| |||| |||||||||||||||||||||| || |||||||| Sbjct 2686 CATGGGGAGCGAACAAGATTAGATACCCTGGTAGTCCATGCAATAAACGAT 2736 >seq195394 Length=3242 Score = 105 bits (116), Expect = 2e-20 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| |||||||| ||| |||||||||||||||||| ||| ||| Sbjct 1148 TATCTGGGGAATAAGCATTGGCTAACTTTGTGTCAGCAGCCGCGGTAATACAGAGGATGC 1089 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| || ||| | ||| ||||||| || | ||| || | | |||| | | || Sbjct 1088 AAGCGTTATCCGAAATGATTGGTCGTAAAGTGTTTGTAGGTGGCTTTTTAAGTCCGCCGT 1029 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTG 150 ||||||| |||| ||| || | |||| Sbjct 1028 CAAATCCCAAGGCTCAACGTGTGTATTG 1001 >seq140935 Length=3138 Score = 96.9 bits (106), Expect = 9e-18 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||| || ||||||| |||| | || | | ||||||||| ||||| |||| || ||| Sbjct 2204 GTGGAGTGGTGAAATCCGTAAAGATCGGAAAGAACACCAACAGCGAAAGCAGTCCGTTGG 2145 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | ||||||||| || | |||||||| ||||||| || ||||||||||||| ||| Sbjct 2144 GCCAACACTGACACTGAGAAACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTA 2085 Query 320 GTCCACGCCCTAAACGAT 337 ||| ||| |||||||| Sbjct 2084 GTCTTAGCCGTAAACGAT 2067 >seq16558 Length=7468 Score = 96.9 bits (106), Expect = 9e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 13 ATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAAT 72 ||||||| ||||||||| |||||| |||| |||||||||| ||| ||||||||||| | Sbjct 875 ATAAGCATCGGCTAACTCTGTGCCACCAGCTGCGGTAATACAGAGGATGCAAGCGTTATT 816 Query 73 CGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATC 128 |||||| | ||| |||||||||| ||| || | | |||| | | || ||||| Sbjct 815 CGGAATGATTGGACGTAAAGCGTCTATAGGTGGCTTTTTAAGTCCGTCGTCAAATC 760 >seq273576 Length=5696 Score = 95.1 bits (104), Expect = 3e-17 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| | ||||||||||||||||||| ||| ||| Sbjct 5184 TATCTGGGGAATAAGCATCGGCTAACTCTGCGCCAGCAGCCGCGGTAATATAGAGGATGC 5243 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAG 92 |||||||| |||||| | ||||||||||| Sbjct 5244 AAGCGTTATCCGGAATGATTGGGCGTAAAG 5273 >seq102141 Length=9732 Score = 80.6 bits (88), Expect = 7e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||| ||||||||| | |||||| |||| ||||||||||| Sbjct 965 GAATAAGCATCGGCTAACTTTGTGTCAGCAGCCGTGCTAATACATAGGATGCAAGCGTTA 906 Query 71 ATCGGAATTACTGG 84 |||||| | ||| Sbjct 905 TCCGGAATGATTGG 892 >seq105642 Length=9271 Score = 78.8 bits (86), Expect = 2e-12 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||| ||| |||||||| ||||| || | | ||||||||| ||||| ||| | || | Sbjct 5918 GTGGAGCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACAGCGAAAGCACTCTGCTAG 5977 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | || |||| || | || ||||| ||||||| || ||||||||||||| ||| Sbjct 5978 GCCGACGTTGACACTGAGAGACAAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTA 6037 Query 320 GTCCACGCCCTAAACGAT 337 ||| ||| |||||||| Sbjct 6038 GTCATAGCCGTAAACGAT 6055 >seq154948 Length=2858 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 ||||||||||||||| ||| ||||||||||| |||||| | |||||||||||||| | Sbjct 708 CAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTG 649 Query 99 CAGGCGGTTGTGTAAG 114 ||| || | | |||| Sbjct 648 TAGGTGGCTTTTTAAG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1283617468224