Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq170814 140 4e-31 seq1183 129 8e-28 seq109908 123 3e-26 seq167508 104 3e-20 seq6022 102 1e-19 seq21131 100 4e-19 seq223894 96.9 5e-18 seq293131 86.0 9e-15 seq82031 80.6 4e-13 seq138388 78.8 1e-12 seq137689 78.8 1e-12 seq403454 77.0 4e-12 seq251588 77.0 4e-12 seq139988 77.0 4e-12 seq304401 75.2 2e-11 seq177861 73.4 5e-11 >seq170814 Length=5502 Score = 140 bits (154), Expect = 4e-31 Identities = 177/241 (73%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 4480 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 4538 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 4539 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 4595 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 4596 -------AGGAGAG-CACCCCTTCTCCCGAAGTTTCGGGGTCATTTTGCCGAGTTCCTTT 4647 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || |||||||||| |||| ||| Sbjct 4648 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCAGTTTGGGGT 4707 Query 248 A 248 | Sbjct 4708 A 4708 >seq1183 Length=5498 Score = 129 bits (142), Expect = 8e-28 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||| ||||||| |||| | ||||||||| ||||| ||| ||| | |||| Sbjct 5444 TTCCAGCACTGGGCAGGTGTCAAACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 5386 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||| ||||| ||| || | | ||| | | | |||| | | Sbjct 5385 TGTTTTTAATAAACACTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 5329 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 5328 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 5277 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 || |||| | | | |||| |||||| |||||| || ||||||||||||| Sbjct 5276 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGT 5224 >seq109908 Length=8891 Score = 123 bits (136), Expect = 3e-26 Identities = 178/249 (71%), Gaps = 23/249 (9%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATC--GACTTACCGTCTTCGCA 59 || ||| | ||| || ||||||||||||| || |||||| | ||||| | ||| || Sbjct 1956 TTTTCCATTCAT-ACTGGGCAGGCGTCAGCCCCCATACATGTGGTCTTAC-GACTTTGCG 1899 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 ||||||||||||| |||||||||| | || || |||||||| || Sbjct 1898 GAGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACCCCCT------- 1846 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 1845 ------TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGA 1798 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| | |||| | || | ||| ||||||||||||| ||||||||||||| Sbjct 1797 GTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGG 1738 Query 240 TTTACGGTA 248 ||| |||| Sbjct 1737 TTTCGGGTA 1729 >seq167508 Length=7017 Score = 104 bits (114), Expect = 3e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| |||||||| || |||||| || |||| | | Sbjct 4635 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCTGAGTTCCTTCGACATGGTTCTCTC 4576 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||| ||||||||| |||| Sbjct 4575 AAGCGCCCTAGTATACTCTACTTGTTCACCTATGTCGGTTTGGGGTA 4529 >seq6022 Length=9997 Score = 102 bits (112), Expect = 1e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||||||||||||||||||||||||| ||||||||| ||||||| |||| | || Sbjct 6353 CACCCCTTCTCCCGAAGTTACGGGGCTGTTTTGCCGAGTTCCTTAGAGGGAGTTGTCTCG 6412 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 6413 TGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 6458 >seq21131 Length=4045 Score = 100 bits (110), Expect = 4e-19 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 149 TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCC 208 |||||||||||||||||||| |||||||||| ||||||| | |||| | || | || Sbjct 3823 TTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCC 3764 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||||||||||||| |||||||||||||||| |||| Sbjct 3763 TAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 3724 >seq223894 Length=14847 Score = 96.9 bits (106), Expect = 5e-18 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||||||||||||||| ||||||| | |||| | Sbjct 270 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 329 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACC 231 || | ||| ||||||||||||| ||||| Sbjct 330 CGCGCCCCTAGGTATTCTCTACCTACCCACC 360 >seq293131 Length=1191 Score = 86.0 bits (94), Expect = 9e-15 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 361 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 420 Query 201 CGAACGCCTTAGTATTCTCTAC 222 || | ||| ||||||||||| Sbjct 421 CGCGCCCCTAGGTATTCTCTAC 442 >seq82031 Length=18440 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| || ||||||||| |||||||||| ||||||| | |||| | Sbjct 13996 GGCACCCCTTCTCCCAAAATTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 13937 Query 201 CGAACGCCTTAGTATTCTCTACCT 224 || | ||| ||||||||||||| Sbjct 13936 CGCGCCCCTAGGTATTCTCTACCT 13913 >seq138388 Length=10867 Score = 78.8 bits (86), Expect = 1e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| || ||||||||| |||||||| | |||| || | |||| | Sbjct 3536 GGCACCCCTTCTCCCAAATTTACGGGGCTATTTTGCCAAGTTCCATAGAGAGAGTTGTCT 3595 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||| ||||||||| |||||||||| | ||| |||| Sbjct 3596 CACGCCCCTAGGTACTCTCTACCTACCCACCTGTGTTGATTTCAGGTA 3643 >seq137689 Length=9739 Score = 78.8 bits (86), Expect = 1e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 157 AAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATT 216 |||||||||||| |||||||||| ||||||| | |||| | || | ||| |||||| Sbjct 2013 AAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAAGTATT 1954 Query 217 CTCTACCTGACCACCTGTGTCGGTTT 242 |||||||| |||||||||| | ||| Sbjct 1953 CTCTACCTACCCACCTGTGTTGTTTT 1928 >seq403454 Length=286 Score = 77.0 bits (84), Expect = 4e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||||||||||| |||| ||||||||||| |||||| || ||| | | Sbjct 22 GCACCCCTTCTCCCGAAGTTATGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTATCTC 81 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTG 233 | |||| |||||| |||| || |||||| Sbjct 82 AAGCGCCCTAGTATATACTACTTGTTCACCTG 113 >seq251588 Length=4300 Score = 77.0 bits (84), Expect = 4e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 1972 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 1914 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 1913 TGTGTTTTTGGTAAACAGTCGC 1892 >seq139988 Length=8971 Score = 77.0 bits (84), Expect = 4e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||| | ||||||||||| ||||||||||| |||||| || |||| | Sbjct 4237 GCACCCCTTCTCTCAAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTT 4296 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTG 233 | | || |||||| |||||| || |||||| Sbjct 4297 AAGCACCCTAGTATACTCTACTTGTTCACCTG 4328 >seq304401 Length=2117 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 170 ATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAG-TATTCTCTACCTGACC 228 |||||||||| |||||||| | |||| | || || |||||| |||||||||||| || Sbjct 1994 ATTTTGCCGAGTTCCTTAAAGAGAGTTGTCTCGCAC-CCTTAGGTATTCTCTACCTACCC 1936 Query 229 ACCTGTGTCGGTTTACGGTA 248 |||||||||||||| |||| Sbjct 1935 ACCTGTGTCGGTTTCTGGTA 1916 >seq177861 Length=2604 Score = 73.4 bits (80), Expect = 5e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 623 CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691279304338