Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq109908 87.8 2e-15 seq217789 84.2 2e-14 seq1183 80.6 3e-13 seq82031 78.8 1e-12 seq167508 77.0 3e-12 seq293131 75.2 1e-11 seq2891 73.4 4e-11 >seq109908 Length=8891 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 1790 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 1847 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || || |||||||| |||||||||||| || Sbjct 1848 GGGGTCGCAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 1897 >seq217789 Length=4315 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||||||| || |||| ||| | || ||| | Sbjct 781 TAAGGAACTCGGCAAAATAGCCCCATAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 724 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || | | |||||||| |||||||||||| || Sbjct 723 GGGGTCGCAGTGACGAGGCCCGGTCGACTGTTTACCAAAAACACAGGTCT 674 >seq1183 Length=5498 Score = 80.6 bits (88), Expect = 3e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 27 ACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAA 86 || |||||| || | || || ||||||| |||||||||| ||| || | |||||| Sbjct 5224 ACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAA 5283 Query 87 CTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 || |||||| |||||| |||||||||||| || |||| Sbjct 5284 CTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 5320 >seq82031 Length=18440 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||| || |||| || |||| ||| | || ||| || Sbjct 13950 TAAGGAACTCGGCAAAATAGCCCCGTAATTTTGGGAGAAGGGGTGCCTCCTCACAAAGGG 14009 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | |||| || ||| || ||| |||||||| |||||||||||| || Sbjct 14010 G--GTTGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 14057 >seq167508 Length=7017 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||| | || | || || ||||||| |||||||||| ||| || | ||| Sbjct 4534 CAAACCGACATAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 4593 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| ||||| |||||| |||||||||||| || |||| Sbjct 4594 GAACTCAGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 4633 >seq293131 Length=1191 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 407 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 350 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| | ||| |||||| |||||||||||| || Sbjct 349 GGGGTCGAAGTGACCAGGCCTGGGCGTTTGTTTACCAAAAACACAGGTCT 300 >seq2891 Length=7591 Score = 73.4 bits (80), Expect = 4e-11 Identities = 70/89 (79%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 101 CCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTCC 160 || |||||||||||| || |||| ||| | || ||| ||| | ||||| || ||| || Sbjct 6179 CCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCGCAGTGACCAGGCCC 6122 Query 161 AGGCAACTGTTTAACAAAAACACAGGGCT 189 ||| |||||||| |||||||||||| || Sbjct 6121 GGGCGACTGTTTACCAAAAACACAGGTCT 6093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528812739724