Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq65439 196 8e-48 seq45144 167 4e-39 seq266492 145 1e-32 seq101416 102 1e-19 seq463350 96.9 5e-18 seq205602 96.9 5e-18 seq76621 86.0 1e-14 seq147839 84.2 3e-14 seq285309 73.4 6e-11 >seq65439 Length=1177 Score = 196 bits (216), Expect = 8e-48 Identities = 169/207 (82%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 603 TACTCGTTGAATACATCAGTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 544 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||| | | | || ||| | |||||||||||||||||| || Sbjct 543 ACCTGTTATTGCCTCAAACTTTCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGC 484 Query 121 C-ACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||| || | |||| |||| ||| ||||||||||||||||| ||||| Sbjct 483 CGTGGGGGGATACCTCCACATAGCTAGTTAGTAGGCTAAGGTCTCGTTCGTTAACGGAAC 424 Query 179 TAACCAGACAAATCACTCCACCAACTA 205 ||| |||||||||| |||||||||||| Sbjct 423 TAAGCAGACAAATCGCTCCACCAACTA 397 >seq45144 Length=337 Score = 167 bits (184), Expect = 4e-39 Identities = 106/115 (92%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||||| |||||||| |||||| ||||||||||||||||||| ||||||| Sbjct 298 GCTAGTTAGCAGGTTGAGGTCTCGCTCGTTAACGGAATTAACCAGACAAATTGCTCCACC 239 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 238 AACTAAGAACGGCCATGCACCACCACCCTTAGAATCAAGAAAGAGCTCTCAGTCT 184 >seq266492 Length=11962 Score = 145 bits (160), Expect = 1e-32 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| || |||||| |||||||| |||||||||||||||||||| |||||| Sbjct 8499 GCTAGTTAGTAGAAAGAGGTCTTGTTCGTTAGCGGAATTAACCAGACAAATCGTTCCACC 8440 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| Sbjct 8439 AACTAAGAACGGCCATGCACCACCATCCATAGAATCAAGAAAAAGCTCTCCGTCTGTC 8382 >seq101416 Length=7294 Score = 102 bits (112), Expect = 1e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| Sbjct 3696 AACCAGACAAATCACTCCACCAATTAAGAACGACCATATACCACCACCTATAGAATCAAG 3637 Query 240 AAAGAGCTATCAATCT 255 ||| |||| ||| ||| Sbjct 3636 AAAAAGCTCTCAGTCT 3621 >seq463350 Length=4861 Score = 96.9 bits (106), Expect = 5e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 2778 AGTGTAGCATGCTCGCGGCCCAAAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAA 2837 Query 78 ACTTCCATTGGCTGGAAG 95 ||||| | ||||| ||| Sbjct 2838 ACTTCGGTGGGCTGAAAG 2855 >seq205602 Length=1887 Score = 96.9 bits (106), Expect = 5e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||||||||| ||||| || |||| |||||||||| ||||| || |||||||||||| Sbjct 1495 TCAATGTAGCGCGAGTGCGACCTAGAATATCTAAGGGCGTCACAAACTTGTTATTGCCTC 1554 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||| | | | || ||| | || ||||||| |||||| Sbjct 1555 AAACTTTCGTGGCCTAAAAGGCCATTTTCCCTCTTAGAAGC 1595 >seq76621 Length=4516 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||| ||||||||| ||||||||||| |||| |||||||||||| | | ||| ||| | Sbjct 3467 AGAAAATCTAAGGGAATCACAGACCTACTATTCCCTCAAACTTCCGTGGCCTGAAAGGCC 3526 Query 99 ATAGTCCCTCTAAGAAG 115 ||| ||||||||||||| Sbjct 3527 ATAATCCCTCTAAGAAG 3543 >seq147839 Length=3549 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 180 AACCAGACAAAT-CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||| | ||||||||| ||||| || | || |||||||||| ||||||| || Sbjct 1243 AACCAGACAAATTCGCTCCACCAATTAAGACCGACTATACACCACCACCGATAGAATTAA 1184 Query 239 GAAAGAGCTATCA 251 ||||||||| ||| Sbjct 1183 GAAAGAGCTCTCA 1171 >seq285309 Length=18633 Score = 73.4 bits (80), Expect = 6e-11 Identities = 85/110 (77%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||| ||| || || || | |||||| ||||||||||||||||||| |||||| | Sbjct 7458 TCAGTGCAGCATGCATGTGGACGT-AACATCCAAGGGCATCACAGACCTGTCATTGCCCC 7516 Query 76 AAACTTCCATTGGCTGGAAG--CCAATAGT-CCCTCTAAGAAGCCAGCCA 122 |||||| || ||||| |||| ||||| | | ||||||||| |||| Sbjct 7517 AAACTTTCA-TGGCTTGAAGGTCCAATCCTACTAACTAAGAAGCTGGCCA 7565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793219109586