Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq52751 129 1e-27 seq20671 125 1e-26 seq285963 113 9e-23 seq250164 93.3 8e-17 seq75297 86.0 1e-14 seq111216 84.2 4e-14 seq45611 78.8 2e-12 seq409059 75.2 2e-11 >seq52751 Length=3029 Score = 129 bits (142), Expect = 1e-27 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 221 CAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATG 280 || ||||| | |||||||| | |||| | ||| |||||||||||||||||| |||| || Sbjct 2122 CAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTG 2063 Query 281 ATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 2062 ATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 2004 >seq20671 Length=1108 Score = 125 bits (138), Expect = 1e-26 Identities = 132/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| |||||||||| |||||||||||| ||||| | |||| | ||| || Sbjct 683 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGG 624 Query 198 AAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256 | | || | | |||||||||||| ||||| | |||||||| | |||| ||| || Sbjct 623 AGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAAACCCATCCGTCGAG 565 Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 |||||||||||||||| |||| ||||||| |||||| || ||||| ||||| Sbjct 564 CAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCG 514 >seq285963 Length=2568 Score = 113 bits (124), Expect = 9e-23 Identities = 105/134 (78%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 213 TGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGG 272 |||||||||| ||||| | |||| ||| | ||| | ||| |||||||||||||||||| Sbjct 658 TGCAAAGGCAGAAGGGAGCTTGATTGCAAGGCCCACTCGTCGAGCAGGGACGAAAGTCGG 717 Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA-------TAAAAG 325 |||| ||||||| |||||| || ||||| |||| |||||| ||||| ||||| Sbjct 718 CCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCATCGCTCAACGGAAAAACCGAAAAAG 777 Query 326 CTACCCTGGGGATA 339 |||||| |||||| Sbjct 778 TTACCCTAGGGATA 791 >seq250164 Length=8436 Score = 93.3 bits (102), Expect = 8e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 243 ACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAAC 302 |||| | ||| |||||||||||||||||| |||| ||||||| |||||| || ||||| Sbjct 7476 ACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAG 7535 Query 303 GGCCGTCGCTCGACGGATAAAAGCTA 328 || ||| |||| ||||||||||| || Sbjct 7536 GGTCGTTGCTCAACGGATAAAAGTTA 7561 >seq75297 Length=6794 Score = 86.0 bits (94), Expect = 1e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 |||||||| |||| ||||||| || ||| || ||||| ||||||||||| |||||||||| Sbjct 2172 AAAGTCGGCCTTAGTGATCCGACGATGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAA 2113 Query 325 GCTACCCTGGGGATA 339 | ||| || |||||| Sbjct 2112 GTTACTCTAGGGATA 2098 >seq111216 Length=5591 Score = 84.2 bits (92), Expect = 4e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 |||| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| || Sbjct 2229 TCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTA 2288 Query 329 CCCTGGGGATA 339 | || |||||| Sbjct 2289 CTCTAGGGATA 2299 >seq45611 Length=17220 Score = 78.8 bits (86), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||| ||| ||||| | |||||||| | ||| | ||| | |||||||||||||| Sbjct 3199 AGTGCAAAAGCAGAAGGGAGCTTGACTGCAAGACCAACCCGTCGAACAGGGACGAAAGTC 3258 Query 271 GGGCTTAA-TGATCCGGCGGTGCTGAATGGAACGGCCGTC 309 ||||||| ||||||| |||||| | ||||| || ||| Sbjct 3259 -GGCTTAAGTGATCCGACGGTGCCTAGTGGAAGAGCTGTC 3297 >seq409059 Length=300 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 279 TGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || ||||| Sbjct 299 TGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 240 Query 339 A 339 | Sbjct 239 A 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977842587456