Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq69713 96.9 4e-18 seq330477 93.3 5e-17 seq273584 93.3 5e-17 seq171009 93.3 5e-17 seq28689 89.7 6e-16 seq301911 87.8 2e-15 seq346656 86.0 7e-15 seq236338 84.2 2e-14 seq125273 84.2 2e-14 seq304150 80.6 3e-13 seq168725 80.6 3e-13 seq65288 78.8 1e-12 >seq69713 Length=1391 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 748 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 689 Query 173 A 173 | Sbjct 688 A 688 >seq330477 Length=210 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACATGGAATTTCGCTACCTTAGGACCGTT 122 Query 173 A 173 | Sbjct 121 A 121 >seq273584 Length=9990 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5758 TACGCCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 5817 Query 173 A 173 | Sbjct 5818 A 5818 >seq171009 Length=2772 Score = 93.3 bits (102), Expect = 5e-17 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 TTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1667 >seq28689 Length=7434 Score = 89.7 bits (98), Expect = 6e-16 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||| | || | | ||||||| ||| Sbjct 5488 GGGTCTTTCTGTCCAGGTACAGGTAGTCTGCATCTTCGCAGACATGTCTATTTCACCGAG 5429 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | || ||||||| ||| | ||||||| ||||| |||||||||| Sbjct 5428 C-CTCTCTTCGAGACAGTGCCCAGATCGTTACGCTTTTCGTGCGGGTCGAAACTTACCCG 5370 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||| |||||||| Sbjct 5369 ACAAGGAATTTCGCTACCTTATGACCGTTA 5340 >seq301911 Length=1839 Score = 87.8 bits (96), Expect = 2e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 121 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 684 TCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACAGTTA 632 >seq346656 Length=219 Score = 86.0 bits (94), Expect = 7e-15 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167 ||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 156 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 102 >seq236338 Length=1025 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 905 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGATAGTT 964 Query 173 A 173 | Sbjct 965 A 965 >seq125273 Length=5212 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 150 TACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTTGCTTAGGACCGTT 91 Query 173 A 173 | Sbjct 90 A 90 >seq304150 Length=2271 Score = 80.6 bits (88), Expect = 3e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||||||| |||||||||||||| ||||| | ||||||| |||||||||||||| Sbjct 905 TACACCTTTCGTGCGGGTCGGAACTTACCGGACAAAG-ATTTCGCCACCTTAGGACCGTT 847 Query 173 A 173 | Sbjct 846 A 846 >seq168725 Length=5198 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||| | |||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 3998 TTCGTACGGGTCGGAATTTACTCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4051 >seq65288 Length=3470 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||| ||| Sbjct 1814 TACACCATTCATGCAGGTTGCTACTTATACGACAAGGAATTTCGCTACCTTAGGACAGTT 1873 Query 173 A 173 | Sbjct 1874 A 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544740834294