Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq143963 114 5e-23 seq79583 113 2e-22 seq90046 104 8e-20 seq250949 100 1e-18 seq92133 100 1e-18 seq86373 87.8 6e-15 seq128916 82.4 3e-13 seq125239 82.4 3e-13 seq22520 78.8 3e-12 seq455540 77.0 1e-11 seq220899 77.0 1e-11 seq242241 75.2 4e-11 >seq143963 Length=593 Score = 114 bits (126), Expect = 5e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 474 TCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTC 533 ||| || ||||||||||||||| ||||| ||||||||| ||||||||||||||| | Sbjct 1 TCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTT 60 Query 534 CGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAA 593 ||| |||||||||| ||||||||||| ||| |||||||| | |||||||||| Sbjct 61 CGCCATCGGTCACCCAGGAGTATTTATCCTTGCAAGGTGGTCCTTGCTGATTCACACGGG 120 Query 594 ATTTCA 599 ||| || Sbjct 121 ATTCCA 126 >seq79583 Length=1584 Score = 113 bits (124), Expect = 2e-22 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || | ||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 156 GGTTTCATGTTCCATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 97 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | || ||||||||||| | |||||||||| || |||||||| | |||||||| Sbjct 96 ACTTCGTTATCGGTCACCCAAGAGTATTTAGCATTGCAAGGTGGTCCTTGCTGATTCACA 37 Query 590 CGAAATTTCA 599 || ||| || Sbjct 36 CGGGATTCCA 27 >seq90046 Length=1222 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 |||||||||||| ||||| ||||||||| |||||||| |||||| |||||||||||| Sbjct 63 TTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCATGGTACTACTCCGCTATCGGT 122 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||| || ||||||| | ||| |||||||| | ||||||||| Sbjct 123 CACCCAGAAGTATTTTGCCTTGCAAGGTGGTCCTTGCTGATTCACAC 169 >seq250949 Length=10164 Score = 100 bits (110), Expect = 1e-18 Identities = 183/263 (70%), Gaps = 18/263 (7%) Strand=Plus/Plus Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 ||| || || ||| || |||| ||||||||||| ||||| |||||| || | | |||| Sbjct 1987 GCTTTCGCGGNGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCA 2046 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| |||||| ||||||| || | |||| |||||| ||| ||||||||| Sbjct 2047 ACATCAGTCAGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCA--CTGGTCATGGATAG 2104 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | |||||||| | | || || ||||||| |||||| |||||| Sbjct 2105 ATCACCCAGGTTCGGGTCCATAAGCAGTTAC-GAT-TGCCCTATGAAGACTCGTTTTCGC 2162 Query 348 TACGGCTACCCCACACGGG-----TTAACCTCGCGAC--ACAACGCAAACTCGCAGGCTC 400 ||| ||| | ||| |||||| || || | | | | |||| ||||| Sbjct 2163 TACAGCTTC----GGTGGGTTCCCTTAACCAAGCCACTGTCTATG---AGTCGCCGGCTC 2215 Query 401 ATTCTTCAAAAGGCACGCCGTCA 423 ||||||||| |||||||| |||| Sbjct 2216 ATTCTTCAACAGGCACGCGGTCA 2238 >seq92133 Length=5482 Score = 100 bits (110), Expect = 1e-18 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 ||||||| | ||| || |||| ||||||||||| ||||| |||||| || | | ||| Sbjct 4043 AGCTATCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTC 4102 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 ||| | ||| ||||||| ||||||| || | |||| |||||| |||| |||||||| Sbjct 4103 AACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATA 4162 Query 287 GATCA 291 ||||| Sbjct 4163 GATCA 4167 >seq86373 Length=1576 Score = 87.8 bits (96), Expect = 6e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| ||||||||| |||||| | |||||| | |||||||||||||| |||||||||| Sbjct 327 GGGGTTCTTTTCACCCTTCCCTTAAGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 386 Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 || ||| |||||||| | |||| ||||| Sbjct 387 AGCCTTGCAAGGTGGTCCTTGCTGATTAACACG 419 >seq128916 Length=10749 Score = 82.4 bits (90), Expect = 3e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || ||||||| Sbjct 9353 TTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTT 9294 Query 241 CGGTCCTCCA 250 |||||||||| Sbjct 9293 CGGTCCTCCA 9284 >seq125239 Length=5763 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||| | | |||| || |||| ||||||||||| ||||| |||||| || | | Sbjct 369 AACCAGCTAGCTCTGAGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATT 428 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 |||||| | ||| | ||||| ||||||| || | |||| |||||| ||| Sbjct 429 CTTCAACATCAGTCGATTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCT 481 >seq22520 Length=574 Score = 78.8 bits (86), Expect = 3e-12 Identities = 89/118 (75%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 237 GGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCG 296 ||||||| ||||||| || | |||| |||||| |||| |||||||||||||| | Sbjct 135 GGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAG 76 Query 297 CTTCGGGTCTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC 353 ||||||||| | | ||| || | ||||||| ||||||||||||||||||| Sbjct 75 GTTCGGGTCTATAGCAGTGACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGC 22 >seq455540 Length=1354 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || ||| ||| Sbjct 8 TTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGAGTT 67 Query 241 CGGTCCTCCA 250 |||||||||| Sbjct 68 CGGTCCTCCA 77 >seq220899 Length=4162 Score = 77.0 bits (84), Expect = 1e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 168 GGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 227 >seq242241 Length=7416 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 514 TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGG 573 ||||||||| ||||||||| |||||||||||| |||| || ||||||||| |||||| Sbjct 5414 TTTCCCTCATGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGG 5355 Query 574 TCCC 577 |||| Sbjct 5354 TCCC 5351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1809168044544