Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq79583 120 8e-25 seq143963 105 2e-20 seq90046 100 7e-19 seq220899 98.7 2e-18 seq86373 87.8 4e-15 seq22520 73.4 1e-10 >seq79583 Length=1584 Score = 120 bits (132), Expect = 8e-25 Identities = 130/171 (76%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||| || |||||||||| | || |||||||||||| | |||||||| Sbjct 178 CTCCTACTGCTTGGGAGCTTACGGTTTCATGTTCCATTTCACTCCCCGATG-GGGGTTCT 120 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| ||||||||| || |||||||||| ||| Sbjct 119 TTTCACCCTTCCCTCACGGTACTACTTCGTTATCGGTCACCCAAGAGTATTTAGCATTGC 60 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 59 AAGGTGGTCCTTGCTGATTCACACGGGATTCCATGTGCCCCATGCTACTCG 9 >seq143963 Length=593 Score = 105 bits (116), Expect = 2e-20 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGT 335 ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| | Sbjct 1 TCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACT 59 Query 336 TCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAA 395 || | |||||||| ||| |||||||| ||||| | | |||||| | ||||| || Sbjct 60 TCGCCATCGGTCACCCAGGAGTATTTATCCTTGCAAGGTGGTCCTTGCTGATTCACACGG 119 Query 396 AGTTTCTCGTGCTCCGTCCTACTCG 420 || | | ||| || | ||||||| Sbjct 120 GATTCCACATGCCCCATGCTACTCG 144 >seq90046 Length=1222 Score = 100 bits (110), Expect = 7e-19 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 286 TTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG 345 ||||||||||| | |||||||||||| || |||||||| ||||||| | | ||||||| Sbjct 63 TTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCATGGTACTACTCCGCTATCGG 121 Query 346 TCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGT 405 ||| ||| ||||||| |||||| | | |||||| | ||||| ||| || | ||| Sbjct 122 TCACCCAGAAGTATTTTGCCTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGT 181 Query 406 GCTCCGTCCTACTCG 420 || || | ||||||| Sbjct 182 GCCCCATGCTACTCG 196 >seq220899 Length=4162 Score = 98.7 bits (108), Expect = 2e-18 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 146 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GGGGGTTCT 204 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCA 338 |||| || |||||||||||||||| |||| Sbjct 205 TTTCACCCTTCCCTCACGGTACTACTTCA 233 >seq86373 Length=1576 Score = 87.8 bits (96), Expect = 4e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||| | ||||||| ||| |||||||||| ||| ||||||| Sbjct 327 GGGGTTCTTTTCACCCTTCCCTTAAGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 386 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 387 AGCCTTGCAAGGTGGTCC 404 >seq22520 Length=574 Score = 73.4 bits (80), Expect = 1e-10 Identities = 94/121 (78%), Gaps = 8/121 (7%) Strand=Plus/Minus Query 44 CGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGC 103 |||||||| |||||| ||||| | |||||| ||| || |||| ||| ||||||||| | Sbjct 136 CGGTTCGGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGTCAT-GGATAGATCAC 80 Query 104 CCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTAC 163 || | || ||||||||| | || ||| | |||||| ||||||||| ||||||||| Sbjct 79 CCAGGTT-CGGGTCTATAGC--AGTGACAATT-GCCCTATGAAGACTCGC-TTTCGCTAC 25 Query 164 G 164 | Sbjct 24 G 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1235840143104