Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq231836 120 6e-25 seq245046 107 4e-21 >seq231836 Length=7505 Score = 120 bits (132), Expect = 6e-25 Identities = 188/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTCC 68 || || ||||| || || | ||||| |||| || ||||| | | ||||| || | Sbjct 231 TGCCCGAGGGCCTGCGTGGCCGTGGGGCAAAACGGTAATTTAACGTCTTGGGATGACGCT 290 Query 69 GACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACC 128 || ||| ||| |||| || ||||||| || || || || || || ||||||| ||| Sbjct 291 GAACCGGCGGTTCAAGTTGGGACATGCGGGGTTGACCTAGGGGACCGGTCCTTGGTCACC 350 Query 129 GGGTCGGTTTATCAAGGGGCCCCACATG-GGTTCTTCTTA--GTAAATAACAACAAAAAG 185 || |||| ||| ||| | || || || | |||| || || | ||| | |||| || Sbjct 351 GGTTCGGCTTACCAAAGTGCACCCCAAGCGGTTTTTGTTGTGGAAAAGACCAACCAA--- 407 Query 186 GATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTG 245 ||||||||| ||||||| |||| | ||||| || |||| |||||||| |||||| Sbjct 408 ---GGGCAAAATGGTAAATTCGTAAAGGTGGATGTCCCCAATGAGTTTTCTGGGTTTGTG 464 Query 246 CAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || ||| || ||||| ||| Sbjct 465 CAATCGGGTTGCCTCGTCGAGATTTGA 491 >seq245046 Length=698 Score = 107 bits (118), Expect = 4e-21 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 46 ATTTGAAATGTTGGGGAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATC 105 |||||| || |||| ||||| || ||| | || ||||||| || ||||| || || | Sbjct 694 ATTTGACGTGCTGGGCGGAGTCGGATCCGGCTATTCAAGTCGGGGCGTGCGGGGTTGACC 635 Query 106 TTGGTGATGGGACCTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCT 165 | || ||| |||||||||||||||| || | ||| || || | ||||| | || || Sbjct 634 TCGGGGATCGGACCTTGGTTACCGGATCCGCTTACCAGGGTGGACCACAAGCTTTTTTTC 575 Query 166 TAGTAAATAACAACAAAAAGG------ATGGGCAAAATAGTAAATTGACAAAGATTGATG 219 ||| | || || | || | ||||| | | |||||||| || | | || Sbjct 574 TAGCGGAGAAGAAGTTGAGGGGCGGGCAAGGGCAGAGTTGTAAATTGGTTAAAGTGGGTG 515 Query 220 TTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTT 278 ||| ||||| || || || || |||||||| || |||| ||| ||||| ||||||||| Sbjct 514 CTCCGGATGAGTTCTCCGGGTTCGTGCAATCGGGTTGCTTTGTTGAGATTTGAAATTTT 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914139487296