Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq110797 96.9 3e-18 seq136568 87.8 1e-15 seq192328 82.4 6e-14 >seq110797 Length=10106 Score = 96.9 bits (106), Expect = 3e-18 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGGG 62 |||||||| || ||||||| ||| | || || | ||| ||||||| |||||||||| Sbjct 362 AGTTGCAGCCTGCAATCCGAACTCAGG-ACGGGTTTTCGGAGTTAGCTCACCCTCGCGGG 420 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| ||||||||| ||||||| |||| |||||||| |||| Sbjct 421 ATCGCGACCCTTTGTCCCGACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATG 480 Query 123 AGGACTTGACGTCATCCCCA 142 | ||||||||||||||| || Sbjct 481 ATGACTTGACGTCATCCTCA 500 >seq136568 Length=5084 Score = 87.8 bits (96), Expect = 1e-15 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAA-GGGCCATGAGGACTTGACG 133 |||| | |||||||| ||||||| |||| ||||||| |||||||| ||||||| || Sbjct 654 TGTAATTGCCATTGTAGCACGTGTGTGGCCCATCCCATAAAGGGCCATGCGGACTTGTCG 713 Query 134 TCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||| || | |||| Sbjct 714 TCATCCCCACCTTCCTCCAGTATATCAC 741 >seq192328 Length=3930 Score = 82.4 bits (90), Expect = 6e-14 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 37 TTCTGGGA-TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 |||| ||| ||||||| |||| ||||| | ||| |||| ||| ||||||| || Sbjct 2731 TTCTTGGAGTTAGCTCACCCTTGCGGGATTGCGACCCTTTGTCCCGGTCATTGTAGCACT 2790 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 |||| |||| |||||||| ||||| ||| ||||||||||| ||||||||| || Sbjct 2791 TGTGTCACCCTGGGCATAAGGGGCATGATGACCTGACGTCATCCTCACCTTCCTTCG 2847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414130458820