Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq102272 105 1e-20 seq156164 100 5e-19 seq273576 95.1 2e-17 seq195394 91.5 2e-16 seq102141 82.4 1e-13 seq16558 78.8 2e-12 >seq102272 Length=6284 Score = 105 bits (116), Expect = 1e-20 Identities = 194/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | ||||| || |||||| || ||||| | Sbjct 283 GCTTTCGTCTCTCAGTGTCAGTGTCGGAGCAGCAGAGTGCTTTCGCCGTTGCTGTTCTTT 342 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||| |||| ||| | |||||| |||| || | |||| || Sbjct 343 CTGATCTCTACGCATTTCATCGCTCCACCGGAAATTCCCTCTGCCCCTACCATACTCCAG 402 Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | | | | ||| | |||||||| | ||| || | ||||| Sbjct 403 CTTGGTAGTTTCCATCGCCTGTCTA-GAGTTGAGCCTTGGGATTTGACGGCGGACTTAAA 461 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 | || |||||| | |||||| |||||| | |||||||||| ||||| ||| ||| Sbjct 462 AT-CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACACTTGCATCCTCTGTACC 520 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||| |||||| ||||| || ||||||||| Sbjct 521 ACCGCGGCTGTTGGCACAAAGTTA-CCAATGCTTATTCC 558 >seq156164 Length=2708 Score = 100 bits (110), Expect = 5e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | ||||||||||||| | |||| ||||||||||| ||| |||||||| Sbjct 45 CCACCTACAGACGCTTTACACCCAATCATTCCGAATAACGCTTGCATCCTCTGTATTACC 104 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||||||| ||||||||| ||||||||| ||| || Sbjct 105 GCAGCTGCTGGCATAGAGTTAGCCGATGCTTATTCCCCAGATA 147 >seq273576 Length=5696 Score = 95.1 bits (104), Expect = 2e-17 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||||| | |||||||||||||||| ||| ||||||||||||||||||| Sbjct 5273 CTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTATATTACCGCGGCTGCTGGCG 5214 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||| ||||||||| ||| || Sbjct 5213 CAGAGTTAGCCGATGCTTATTCCCCAGATA 5184 >seq195394 Length=3242 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| ||||| | | |||||||||||||| ||| |||||||| Sbjct 1046 CCACCTACAAACACTTTACGACCAATCATTTCGGATAACGCTTGCATCCTCTGTATTACC 1105 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||| ||| |||||||| ||||||||| ||| || Sbjct 1106 GCGGCTGCTGACACAAAGTTAGCCAATGCTTATTCCCCAGATA 1148 >seq102141 Length=9732 Score = 82.4 bits (90), Expect = 1e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 209 CCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTA 268 ||||| | |||||||||||||||| |||| |||||| | ||||||||| ||| ||||| Sbjct 892 CCAATCATTCCGGATAACGCTTGCATCCTATGTATTAGCACGGCTGCTGACACAAAGTTA 951 Query 269 GCCGTGGCTTATTCC 283 |||| ||||||||| Sbjct 952 GCCGATGCTTATTCC 966 >seq16558 Length=7468 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||| | | |||||| ||||| | |||| ||||||||||| ||| |||||||| Sbjct 783 CCACCTATAGACGCTTTACGTCCAATCATTCCGAATAACGCTTGCATCCTCTGTATTACC 842 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || |||| |||||| ||||||||| |||||| || Sbjct 843 GCAGCTGGTGGCACAGAGTTAGCCGATGCTTATGCC 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825075298726