Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq65439 102 8e-20 >seq65439 Length=1177 Score = 102 bits (112), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 40 AAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTA 98 ||||| |||| |||| | |||||||| ||||| |||| | |||||| | |||| ||| Sbjct 1 AAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTA 59 Query 99 TTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 || ||| || | |||| || |||||||| || | ||| ||||||||| ||||| Sbjct 60 TTATGTTGGCCTTCAGGATCGGA-GTAATGATTAACAGGGACAGTCGGGGGCAATAGTAT 118 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | || |||| ||||||||||||||||||||| Sbjct 119 TTCATAGTCAGAGGTGAAATTCTTGGATTTAT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509699026240