Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq102272 214 4e-53 seq140935 118 3e-24 seq128165 116 9e-24 seq105642 109 1e-21 seq195394 102 2e-19 seq242421 98.7 2e-18 seq154948 87.8 4e-15 seq273576 84.2 5e-14 seq145483 80.6 6e-13 seq177006 75.2 3e-11 seq15265 75.2 3e-11 seq279595 73.4 9e-11 >seq102272 Length=6284 Score = 214 bits (236), Expect = 4e-53 Identities = 284/388 (73%), Gaps = 6/388 (2%) Strand=Plus/Minus Query 23 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 82 ||||| |||||| |||||||||| ||| ||| || || |||||||||||| | ||| Sbjct 544 TAACTTTGTGCCAACAGCCGCGGTGGTACAGAGGATGCAAGTGTTATCCGGAATGATTGG 485 Query 83 GCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG 142 |||||||| || |||||||| || ||||||| | || ||| | | |||||||| | Sbjct 484 GCGTAAAGCGTCTGTAGGTGGATT-TTAAGTCCGCCGTCAAATCCCAAGGCTCAACTCTA 426 Query 143 GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTA 202 | || | |||||| | ||| |||| | ||||||| |||||| | ||| | Sbjct 425 GACAGGCGATGGAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGGGAATTTCCGGTGGA 366 Query 203 GCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGT 262 ||| ||||||||||||| || || | ||||| || |||||| || ||||| | | Sbjct 365 GCGATGAAATGCGTAGAGATCAGAAAGAACAGCAACGGCGAAAGCACTCTGCTGCTCCGA 306 Query 263 AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322 |||||||||||| ||||||| |||||||||| |||||||||||||| |||||| Sbjct 305 CACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATAGGATTAGATACCC-ATTAGTCCT 247 Query 323 CGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT--AAGTGCTCCGGTGCCGCAGCAA 380 ||||||||||||| |||||||| || | || || | || | | ||| | ||| | Sbjct 246 AGCCGTAAACGATGGATACTAGGCGT-TGTGCATATCGACCTG-TGCAGTGTAGTAGCTA 189 Query 381 ACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| ||||||| || |||||||||| Sbjct 188 ACGCGTTAAGTATCCCTTCTGGGGAGTA 161 >seq140935 Length=3138 Score = 118 bits (130), Expect = 3e-24 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 |||||||| | || ||| |||||||| | |||||||| | | ||||| | || Sbjct 2271 GGCTCAACTCTGGACATGCGGTTGAAACTACCAAGCTAGAGTACGGTAGGGGTAGAGGGG 2212 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| ||| || |||||||| |||| | || | | |||||||| ||||| || | Sbjct 2211 ATTATCGGTGGAGTGGTGAAATCCGTAAAGATCGGAAAGAACACCAACAGCGAAAGCAGT 2152 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 | ||| | |||||||||||| ||||||| ||||||| || ||||||||||| Sbjct 2151 CCGTTGGGCCAACACTGACACTGAGAAACGAAAGCTAGGGGAGCGAATGGGATTAGATAC 2092 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 || |||||| ||||||||||||| |||||||| Sbjct 2091 CCCAGTAGTCTTAGCCGTAAACGATGGATACTAGG 2057 >seq128165 Length=956 Score = 116 bits (128), Expect = 9e-24 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| |||| |||| | ||||| | | ||||| Sbjct 88 AGTGGAATTTCGTGTGTAGGGGTGAAATTCGTAAATATACGAAGGAATGCAAA--GCGAA 145 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 146 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 205 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||| | |||||||||| |||||||||||||| Sbjct 206 CGATAACGTGGTAGTCCATGCCGTAAACGATGA 238 >seq105642 Length=9271 Score = 109 bits (120), Expect = 1e-21 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||| || ||||| | ||| |||||||||||| Sbjct 5874 GAAACTACCAAGCTGGAGTACGGTAGGGGGAAAGGGAATGTCCGGTGGAGCGGTGAAATG 5933 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 ||||| || | | |||||||| ||||| || |||| | | | |||||||| Sbjct 5934 TGTAGAGATCGGAAAGAACACCAACAGCGAAAGCACTCTGCTAGGCCGACGTTGACACTG 5993 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || | ||||| ||||||| || ||||||||||||| |||||| |||||||||| Sbjct 5994 AGAGACAAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCATAGCCGTAAACG 6053 Query 334 ATGAATACTA 343 ||| |||||| Sbjct 6054 ATGGATACTA 6063 >seq195394 Length=3242 Score = 102 bits (112), Expect = 2e-19 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| ||| |||||||||||||||||| ||| || ||||||||||| ||| | Sbjct 1129 GGCTAACTTTGTGTCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGAAATGAT 1070 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||| ||||||| || |||||||| || ||||||| | || ||| | | |||||||| Sbjct 1069 TGGTCGTAAAGTGTTTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAAGGCTCAAC 1011 >seq242421 Length=3517 Score = 98.7 bits (108), Expect = 2e-18 Identities = 197/289 (68%), Gaps = 25/289 (9%) Strand=Plus/Plus Query 55 GGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||| || ||| | | |||| ||||||||||||||||||||||| || | || Sbjct 2469 GGGGGCAAGTGTTCTTCCGAATGACTGGGCGTAAAGGGTGCGTAGGCAGTG-----AATC 2523 Query 115 AGAGGTGAAAGGCTATGGCTCAACCCCGGGAC----TGCTTTTGAAACTGCAGGGC--TA 168 | |||||| ||| | | | | | | |||| | |||| || | | | Sbjct 2524 GGT--TGAAAGTGAATGTCACCAGAAAGTGGCGAAATGCTCTCAAAAC--CAAGTCACTG 2579 Query 169 GAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAG 228 ||||| || || |||||||| | |||||| |||||||| |||| |||| | || Sbjct 2580 GAGTGAGACAGAGGAGAGTGGAATCTCGTGTGTAGGGGTGAAATCCGTAAATATACGAAG 2639 Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 ||| ||| |||||||| || |||| | | || | | ||||||| || Sbjct 2640 GAATGCCAAAAGCGAAGGCAACTCTCTGG---------GTCCCT-ACGTGCGAAAGCATG 2689 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||| |||| |||||||||||||||||||||| || |||||||||| Sbjct 2690 GGGAGCGAACAAGATTAGATACCCTGGTAGTCCATGCAATAAACGATGA 2738 >seq154948 Length=2858 Score = 87.8 bits (96), Expect = 4e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 ||||||||||||||| ||| || ||||||||||||||| | ||||||||||| || | Sbjct 708 CAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTG 649 Query 97 TAGGTGGTTTCTTAAGTC 114 ||||||| || ||||||| Sbjct 648 TAGGTGGCTTTTTAAGTC 631 >seq273576 Length=5696 Score = 84.2 bits (92), Expect = 5e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| | ||||||||||||||||||| ||| || ||| Sbjct 5188 TGGGGAATAAGCATCGGCTAACTCTGCGCCAGCAGCCGCGGTAATATAGAGGATGCAAGC 5247 Query 65 GTTATCCGGAATTACTGGGCGTAAAG 90 |||||||||||| | ||||||||||| Sbjct 5248 GTTATCCGGAATGATTGGGCGTAAAG 5273 >seq145483 Length=16042 Score = 80.6 bits (88), Expect = 6e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 270 ACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTA 329 |||||| |||||| ||||||| || ||||||||||||| |||||||| |||||| Sbjct 7936 ACTGAGAGACGAAAGTTAGGGGAGCGAATGGGATTAGATACCCCGGTAGTCCTAGCCGTA 7995 Query 330 AACGATGAATACTAGGTGT 348 ||||||| |||||||| || Sbjct 7996 AACGATGGATACTAGGCGT 8014 >seq177006 Length=5702 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 52 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 5154 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG 5204 >seq15265 Length=10101 Score = 75.2 bits (82), Expect = 3e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 |||||||| ||||||||||| ||||||||| || || |||||| ||||||||| |||| | Sbjct 9897 GAAAGCGTAGGGAGCAAACATGATTAGATATCCAGGGAGTCCATGCCGTAAACAATGAGT 9838 Query 340 A 340 | Sbjct 9837 A 9837 >seq279595 Length=16584 Score = 73.4 bits (80), Expect = 9e-11 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||| |||| | ||||||| |||||| ||| |||||||||||||||||| ||| Sbjct 8280 GCTGGAGTATGGTAGGGGCAGAGGGAATTTACGGTGGAGCGGTGAAATGCGTAGAAATTG 8339 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | | |||||||| ||||| || |||||| | | |||||||||| | ||||| Sbjct 8340 GAAAGAACACCAACAGCGAAAGCACTCTGCTGGGCCGATACTGACACTGGGAGACGAAAC 8399 Query 285 CGTGGGGAGCAAACAGGATT 304 | |||||| || ||||| Sbjct 8400 CTATGGGAGCGAATGGGATT 8419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1197618283008